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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL266
Library SS
(Link to library)
Clone ID SSL266
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09486-1
Original site URL
Representative seq. ID SSL266P
(Link to Original site)
Representative DNA sequence 
>SSL266 (SSL266Q) /CSM/SS/SSL2-C/SSL266Q.Seq.d/
TACAAATAATAAATACACACACACACACCCCACAAATAATATTCAGATTAATTCAATTAA
TAATTTTAAAGATTTTAAATATACAAATTTAAATAAAATAATAATATTAATAAAAATAAT
AAAAAATAATAATAATTAATAATTAATAATTAAATAAATTAATTAAAAATTGATAAATTA
AATAAATTTAAAAAAATGATTAAAGTGGCAAGTAAAGATCCGATTGTATTCAAAAATAGA
AAAGATGCTGGTAAACAATTATTAAATTTTATTAAACAAGAAGTAAAAGGATTAAATAAA
GAAAATGCAGTAGTGATTGCTCTACCAAGAGGTGGGGTACCAGTTGCCTTTGAAATXXXX
XXXXXXTGNCCAAACTGATGATAGTGAAGTAATNGAATTTTTNGAAAAATCATTAAATTN
GGGTGATAGGNTTAATGTATACNTTGATTTTTCCTATTTTTTTTTTTTTTTTAAAAAAAA
AAAACAAACCAAACAAGTTTATTTTCATTTTTTTTTTTTTAAAAAAAAAGCAATATTAAG
TTAAATGATAAACAAAGAAATATTTTTCCAATTCATTAATCCAATAAAACTTTAAATTAT
AAACATTTTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence 
yk**ihthtphk*ysd*fn**f*rf*iykfk*nnninknnkk***liinn*in*LKIDKL
NKFKKMIKVASKDPIVFKNRKDAGKQLLNFIKQEVKGLNKENAVVIALPRGGVPVAFE--
-

---XQTDDSEVXEFXEKSLNXGDRXNVYXDFSYFFFFFKKKKQTKQVYFHFFFFKKKAIL
S*minkeiffqfinpikl*iiniffiqkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yk**ihthtphk*ysd*fn**f*rf*iykfk*nnninknnkk***liinn*in*LKIDKL
NKFKKMIKVASKDPIVFKNRKDAGKQLLNFIKQEVKGLNKENAVVIALPRGGVPVAFE--
-

---xpn****snxifxkiikxg**x*cix*fflfffff*kkktnqtslfsffff*kksni
klndkqrnifpih*snktlnykhffyskkkkkkk

Frame B:
tnnkyththptnniqinsinnfkdfkytnlnkiiilikiiknnnn**liik*in*klin*
inlkk*lkwqvkirlyskiekmlvnny*illnkk*kd*ikkmq**llyqevgyqlplk--
-

---XQTDDSEVXEFXEKSLNXGDRXNVYXDFSYFFFFFKKKKQTKQVYFHFFFFKKKAIL
S*minkeiffqfinpikl*iiniffiqkkkkkkk

Frame C:
qiinththtpqiifrliqliilkilniqi*ik**y**k**kiiiinn**lnklikn**ik
*i*knd*sgk*rsdciqk*krcw*tiikfy*trskrik*rkcssdcstkrwgtscl*n--
-

---xklmivk*xnfxknh*ixviglmytlifpifffflkkknkpnkfififfflkkkqy*
vk**tkkyfsnsliq*nfkl*tfflfkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL266 (SSL266Q) /CSM/SS/SSL2-C/SSL266Q.Seq.d/                        420   e-116
VFN309 (VFN309Q) /CSM/VF/VFN3-A/VFN309Q.Seq.d/                         40   0.040
VFK719 (VFK719Q) /CSM/VF/VFK7-A/VFK719Q.Seq.d/                         40   0.040
SSM533 (SSM533Q) /CSM/SS/SSM5-B/SSM533Q.Seq.d/                         40   0.040
SSL337 (SSL337Q) /CSM/SS/SSL3-B/SSL337Q.Seq.d/                         40   0.040
SSK449 (SSK449Q) /CSM/SS/SSK4-C/SSK449Q.Seq.d/                         40   0.040
SSK243 (SSK243Q) /CSM/SS/SSK2-B/SSK243Q.Seq.d/                         40   0.040
SSH820 (SSH820Q) /CSM/SS/SSH8-A/SSH820Q.Seq.d/                         40   0.040
SSG655 (SSG655Q) /CSM/SS/SSG6-C/SSG655Q.Seq.d/                         40   0.040
SSG456 (SSG456Q) /CSM/SS/SSG4-C/SSG456Q.Seq.d/                         40   0.040
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC128405|AC128405.3 Rattus norvegicus clone CH230-156I7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    54  0.002  1
AC112813|AC112813.3 Rattus norvegicus clone CH230-15A23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    54  0.002  1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40  0.005  4
AP001116|AP001116.1 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B677J23, LL56-APP region.    44  0.025  4
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    36  0.036  7
AI626319|AI626319.1 fc13e08.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA 3', mRNA sequence.    38  0.055  2
AC132394|AC132394.2 Mus musculus chromosome UNK clone RP23-391F16, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  0.059  4
AC092915|AC092915.7 Homo sapiens 3q BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  0.062  6
AC099122|AC099122.5 Rattus norvegicus clone CH230-46L16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.070  4
AX323745|AX323745.1 Sequence 233 from Patent WO0192565.           42  0.080  2
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016828_397(AE016828|pid:none) Coxiella burnetii RSA 493, compl...    51   3e-05
CP001019_1378(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    51   3e-05
CP001080_130(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    49   9e-05
CP000806_852(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    47   6e-04
CP000840_264(CP000840|pid:none) Acaryochloris marina MBIC11017 p...    46   8e-04
CP000113_5284(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    45   0.002
CP001408_691(CP001408|pid:none) Burkholderia pseudomallei MSHR34...    44   0.003
CP000570_762(CP000570|pid:none) Burkholderia pseudomallei 668 ch...    44   0.003
CP000099_1490(CP000099|pid:none) Methanosarcina barkeri str. Fus...    44   0.003
CP001016_943(CP001016|pid:none) Beijerinckia indica subsp. indic...    44   0.004
protein update 2009. 6.15
PSORT 

 psg: 0.59  gvh: 0.37  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSL266 is cyt
5' end seq. ID SSL266F
5' end seq. 
>SSL266F.Seq
TACAAATAATAAATACACACACACACACCCCACAAATAATATTCAGATTAATTCAATTAA
TAATTTTAAAGATTTTAAATATACAAATTTAAATAAAATAATAATATTAATAAAAATAAT
AAAAAATAATAATAATTAATAATTAATAATTAAATAAATTAATTAAAAATTGATAAATTA
AATAAATTTAAAAAAATGATTAAAGTGGCAAGTAAAGATCCGATTGTATTCAAAAATAGA
AAAGATGCTGGTAAACAATTATTAAATTTTATTAAACAAGAAGTAAAAGGATTAAATAAA
GAAAATGCAGTAGTGATTGCTCTACCAAGAGGTGGGGTACCAGTTGCCTTTGAAAT----
------
Length of 5' end seq. 356
3' end seq. ID SSL266Z
3' end seq. 
>SSL266Z.Seq
----------TGNCCAAACTGATGATAGTGAAGTAATNGAATTTTTNGAAAAATCATTAA
ATTNGGGTGATAGGNTTAATGTATACNTTGATTTTTCCTATTTTTTTTTTTTTTTTAAAA
AAAAAAAACAAACCAAACAAGTTTATTTTCATTTTTTTTTTTTTAAAAAAAAAGCAATAT
TAAGTTAAATGATAAACAAAGAAATATTTTTCCAATTCATTAATCCAATAAAACTTTAAA
TTATAAACATTTTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 274
Connected seq. ID SSL266P
Connected seq. 
>SSL266P.Seq
TACAAATAATAAATACACACACACACACCCCACAAATAATATTCAGATTAATTCAATTAA
TAATTTTAAAGATTTTAAATATACAAATTTAAATAAAATAATAATATTAATAAAAATAAT
AAAAAATAATAATAATTAATAATTAATAATTAAATAAATTAATTAAAAATTGATAAATTA
AATAAATTTAAAAAAATGATTAAAGTGGCAAGTAAAGATCCGATTGTATTCAAAAATAGA
AAAGATGCTGGTAAACAATTATTAAATTTTATTAAACAAGAAGTAAAAGGATTAAATAAA
GAAAATGCAGTAGTGATTGCTCTACCAAGAGGTGGGGTACCAGTTGCCTTTGAAAT----
------TGNCCAAACTGATGATAGTGAAGTAATNGAATTTTTNGAAAAATCATTAAATTN
GGGTGATAGGNTTAATGTATACNTTGATTTTTCCTATTTTTTTTTTTTTTTTAAAAAAAA
AAAACAAACCAAACAAGTTTATTTTCATTTTTTTTTTTTTAAAAAAAAAGCAATATTAAG
TTAAATGATAAACAAAGAAATATTTTTCCAATTCATTAATCCAATAAAACTTTAAATTAT
AAACATTTTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 630
Full length Seq ID -
Full length Seq. -
Length of full length seq. -