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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL261
Library SS
(Link to library)
Clone ID SSL261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16357-1
Original site URL
Representative seq. ID SSL261P
(Link to Original site)
Representative DNA sequence 
>SSL261 (SSL261Q) /CSM/SS/SSL2-C/SSL261Q.Seq.d/
GGAAATTAATGAGATTTTAAAAAAAAAATAAAAAATAATAATAATAATAATAATAATAAT
AATAATAATAAAATTACCGATAATAATTTTAACAATAACAATAATAATAATAACAATAAC
AATAATATTAATAATAATGAAGATATTAACGATAAAAACGATGATAATACCGAATCAACA
ACAACACAATTCGAATTAGCCGAAGATGGTTGGGAAGATAATTTAAATAATAGTGTAAAT
TCTACATCAAGCAATATTAGTAATTCTAATAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAAXXXXXXXXXXAGATTATGATTTTGGTGAAAATAG
TAATATTAATTTTGAAGAAACTAAAGAAGTTAGAAAAATTGATAATAGTACAATCGATGA
TATGATTGTATTAAAAAAGAATATTAATAAGATTACATGGGAACAATTTATGGATAATTT
TAAAGGTTCAAAATATTCAAAGGGTGTACATGGTAGAATGAAGGATCTGGGTTGGCAAGC
ATCACATGGTGTCGATGGTTCCTTGAATTCAAGGGTAATTGGTGATGTTACTTGGTCAAT
TTGGAATACTCTTTCATCTGCTGTCAAATCCATTAGAGAAGTTACCACCGAAGAAAGTAA
TGAACTCATCGATATCGTTTGTTTATTACAACCAATGTTGGTTAGAATGTGGTTGGATAC
AATTAAAAACTCTAGAATCGGTGTTATGAACGAAGGTATAGTCGTGGCTCAATGGAAACA
AGAAAAAAAAAAAAAAAAAAAAACAGG
sequence update 2001. 3. 2
Translated Amino Acid sequence 
gn**DFKKKIKNNNNNNNNNNNNKITDNNFNNNNNNNNNNNNINNNEDINDKNDDNTEST
TTQFELAEDGWEDNLNNSVNSTSSNISNSNNNNNNNNNNNNNNNNNNN---

---DYDFGENSNINFEETKEVRKIDNSTIDDMIVLKKNINKITWEQFMDNFKGSKYSKGV
HGRMKDLGWQASHGVDGSLNSRVIGDVTWSIWNTLSSAVKSIREVTTEESNELIDIVCLL
QPMLVRMWLDTIKNSRIGVMNEGIVVAQWKQEKKKKKKT
Translated Amino Acid sequence (All Frames) 
Frame A:
gn**DFKKKIKNNNNNNNNNNNNKITDNNFNNNNNNNNNNNNINNNEDINDKNDDNTEST
TTQFELAEDGWEDNLNNSVNSTSSNISNSNNNNNNNNNNNNNNNNNNN---

---rl*fw*k**y*f*rn*rs*kn***ynr*ydcikkey**dymgtiyg*f*rfkifkgc
tw*negsglasitwcrwflefkgnw*cylvnleysficcqih*rsyhrrk**thryrlfi
ttnvg*nvvgyn*kl*nrcyerrysrgsmetrkkkkkknr

Frame B:
eineilkkk*kiiiiiiiiiiiiklpiiiltitiiiititiiliimkiltiktmiipnqq
qhnsn*pkmvgkii*iiv*ilhqailvilitttttttttttttttttt---

---DYDFGENSNINFEETKEVRKIDNSTIDDMIVLKKNINKITWEQFMDNFKGSKYSKGV
HGRMKDLGWQASHGVDGSLNSRVIGDVTWSIWNTLSSAVKSIREVTTEESNELIDIVCLL
QPMLVRMWLDTIKNSRIGVMNEGIVVAQWKQEKKKKKKT

Frame C:
klmrf*kknkk************nyr**f*q*q****q*q*y****ry*r*kr**yrinn
ntirisrrwlgr*fk**ckfyikqy**f**qqqqqqqqqqqqqqqqqq---

---imilvkivililkklkklekliivqsmi*ly*krilirlhgnnlwiilkvqniqrvy
mve*riwvgkhhmvsmvp*iqg*lvmllgqfgilfhllsnpleklppkkvmnssisfvyy
nqcwlecgwiqlktlesvl*tkv*swlngnkkkkkkkkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL261 (SSL261Q) /CSM/SS/SSL2-C/SSL261Q.Seq.d/                        884   0.0
SSK696 (SSK696Q) /CSM/SS/SSK6-D/SSK696Q.Seq.d/                        813   0.0
VSJ254 (VSJ254Q) /CSM/VS/VSJ2-C/VSJ254Q.Seq.d/                         38   0.20
VHK272 (VHK272Q) /CSM/VH/VHK2-C/VHK272Q.Seq.d/                         38   0.20
VHG857 (VHG857Q) /CSM/VH/VHG8-C/VHG857Q.Seq.d/                         38   0.20
VHE689 (VHE689Q) /CSM/VH/VHE6-D/VHE689Q.Seq.d/                         38   0.20
SSK343 (SSK343Q) /CSM/SS/SSK3-B/SSK343Q.Seq.d/                         38   0.20
SSG202 (SSG202Q) /CSM/SS/SSG2-A/SSG202Q.Seq.d/                         38   0.20
SLB734 (SLB734Q) /CSM/SL/SLB7-B/SLB734Q.Seq.d/                         38   0.20
CHM526 (CHM526Q) /CSM/CH/CHM5-B/CHM526Q.Seq.d/                         38   0.20
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116538|AC116538.2 Drosophila melanogaster clone RP98-3F23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.56  3
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    38  0.62  4
AC105908|AC105908.5 Homo sapiens chromosome 11, clone RP11-636L13, complete sequence.    46  0.67  1
AF015567|AF015567.1 Dictyostelium discoideum PotA (potA) gene, partial cds.    34  0.81  3
AL008970|AL008970.3 Plasmodium falciparum MAL3P4.                 38  0.97  4
AF395104|AF395104.1 Rhytida stephenensis 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    40  2.0  2
AC091813|AC091813.6 Homo sapiens BAC clone RP11-616K2 from 7, complete sequence.    40  2.4  5
AL844212|AL844212.8 Mouse DNA sequence from clone RP23-29B20 on chromosome 4.    38  2.6  2
AP001650|AP001650.3 Homo sapiens genomic DNA, chromosome 18q23 clone:RP11-760M23, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  2.7  1
AC020479|AC020479.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44  2.7  1
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992690_433(FM992690|pid:none) Candida dubliniensis CD36 chromo...    35   2.8
AM485285_2(AM485285|pid:none) Vitis vinifera contig VV78X275692....    34   6.3
protein update 2009. 6.15
PSORT 

 psg: 0.36  gvh: -0.09  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSL261 is nuc
5' end seq. ID SSL261F
5' end seq. 
>SSL261F.Seq
GGAAATTAATGAGATTTTAAAAAAAAAATAAAAAATAATAATAATAATAATAATAATAAT
AATAATAATAAAATTACCGATAATAATTTTAACAATAACAATAATAATAATAACAATAAC
AATAATATTAATAATAATGAAGATATTAACGATAAAAACGATGATAATACCGAATCAACA
ACAACACAATTCGAATTAGCCGAAGATGGTTGGGAAGATAATTTAAATAATAGTGTAAAT
TCTACATCAAGCAATATTAGTAATTCTAATAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAA----------
Length of 5' end seq. 326
3' end seq. ID SSL261Z
3' end seq. 
>SSL261Z.Seq
----------AGATTATGATTTTGGTGAAAATAGTAATATTAATTTTGAAGAAACTAAAG
AAGTTAGAAAAATTGATAATAGTACAATCGATGATATGATTGTATTAAAAAAGAATATTA
ATAAGATTACATGGGAACAATTTATGGATAATTTTAAAGGTTCAAAATATTCAAAGGGTG
TACATGGTAGAATGAAGGATCTGGGTTGGCAAGCATCACATGGTGTCGATGGTTCCTTGA
ATTCAAGGGTAATTGGTGATGTTACTTGGTCAATTTGGAATACTCTTTCATCTGCTGTCA
AATCCATTAGAGAAGTTACCACCGAAGAAAGTAATGAACTCATCGATATCGTTTGTTTAT
TACAACCAATGTTGGTTAGAATGTGGTTGGATACAATTAAAAACTCTAGAATCGGTGTTA
TGAACGAAGGTATAGTCGTGGCTCAATGGAAACAAGAAAAAAAAAAAAAAAAAAAAACAG
G
Length of 3' end seq. 471
Connected seq. ID SSL261P
Connected seq. 
>SSL261P.Seq
GGAAATTAATGAGATTTTAAAAAAAAAATAAAAAATAATAATAATAATAATAATAATAAT
AATAATAATAAAATTACCGATAATAATTTTAACAATAACAATAATAATAATAACAATAAC
AATAATATTAATAATAATGAAGATATTAACGATAAAAACGATGATAATACCGAATCAACA
ACAACACAATTCGAATTAGCCGAAGATGGTTGGGAAGATAATTTAAATAATAGTGTAAAT
TCTACATCAAGCAATATTAGTAATTCTAATAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAA----------AGATTATGATTTTGGTGAAAATAG
TAATATTAATTTTGAAGAAACTAAAGAAGTTAGAAAAATTGATAATAGTACAATCGATGA
TATGATTGTATTAAAAAAGAATATTAATAAGATTACATGGGAACAATTTATGGATAATTT
TAAAGGTTCAAAATATTCAAAGGGTGTACATGGTAGAATGAAGGATCTGGGTTGGCAAGC
ATCACATGGTGTCGATGGTTCCTTGAATTCAAGGGTAATTGGTGATGTTACTTGGTCAAT
TTGGAATACTCTTTCATCTGCTGTCAAATCCATTAGAGAAGTTACCACCGAAGAAAGTAA
TGAACTCATCGATATCGTTTGTTTATTACAACCAATGTTGGTTAGAATGTGGTTGGATAC
AATTAAAAACTCTAGAATCGGTGTTATGAACGAAGGTATAGTCGTGGCTCAATGGAAACA
AGAAAAAAAAAAAAAAAAAAAAACAGG
Length of connected seq. 797
Full length Seq ID -
Full length Seq. -
Length of full length seq. -