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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL256
Library SS
(Link to library)
Clone ID SSL256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16488-1
Original site URL
Representative seq. ID SSL256P
(Link to Original site)
Representative DNA sequence 
>SSL256 (SSL256Q) /CSM/SS/SSL2-C/SSL256Q.Seq.d/
AGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAA
GAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAAC
CATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGT
TATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAA
ATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTXXXXXXXXXXCGA
GAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAAG
AGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAACC
ATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGTT
ATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAAA
TCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAATAGAAAAT
AAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATAT
sequence update 1999. 1.17
Translated Amino Acid sequence 
rtw*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchlqfmfnc
ycstnwwsc*NHCRLSFKTKIRLRLPSNRTNAFNF---

---RERGDLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSS
CSTVIAQPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kkmlcae**y
Translated Amino Acid sequence (All Frames) 
Frame A:
rtw*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchlqfmfnc
ycstnwwsc*NHCRLSFKTKIRLRLPSNRTNAFNF---

---RERGDLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSS
CSTVIAQPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kkmlcae**y

Frame B:
ergdllfpsiesekrkhklkrlvqapnsffmdinchgcrtittvfshaqnvvicsscstv
iaqptggraritagcrlrqksd*gyrpiaptlsif---

---envviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktlsfavh
vqllllnqlvvvleslpvvv*dknptkvtvqshqrfqfff**kinnkkkcyvqsnn

Frame C:
nvviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktlsfavhvqll
llnqlvvvleslpvvv*dknptkvtvqshqrfqff---

---rtw*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchlqfm
fncycstnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikknamcrvii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK318 (VSK318Q) /CSM/VS/VSK3-A/VSK318Q.Seq.d/                        569   e-161
VSJ774 (VSJ774Q) /CSM/VS/VSJ7-D/VSJ774Q.Seq.d/                        569   e-161
VSJ716 (VSJ716Q) /CSM/VS/VSJ7-A/VSJ716Q.Seq.d/                        569   e-161
VSJ645 (VSJ645Q) /CSM/VS/VSJ6-B/VSJ645Q.Seq.d/                        569   e-161
VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                        569   e-161
VSI793 (VSI793Q) /CSM/VS/VSI7-D/VSI793Q.Seq.d/                        569   e-161
VSI587 (VSI587Q) /CSM/VS/VSI5-D/VSI587Q.Seq.d/                        569   e-161
VSI480 (VSI480Q) /CSM/VS/VSI4-D/VSI480Q.Seq.d/                        569   e-161
VSI460 (VSI460Q) /CSM/VS/VSI4-C/VSI460Q.Seq.d/                        569   e-161
VSI109 (VSI109Q) /CSM/VS/VSI1-A/VSI109Q.Seq.d/                        569   e-161
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   287  e-153  5
Z28156|Z28156.1 S.cerevisiae chromosome XI reading frame ORF YKL156w.    50  0.034  1
AX536650|AX536650.1 Sequence 251 from Patent WO02064766.          50  0.034  1
BU641274|BU641274.2 mgmk005xK07f.b pmk1 in pBluescriptII sk(-) plasmid Magnaporthe grisea cDNA clone mgmk005xK07 5', mRNA sequence.    50  0.034  1
Z28155|Z28155.1 S.cerevisiae chromosome XI reading frame ORF YKL155c.    50  0.034  1
Z26877|Z26877.1 S.cerevisiae (S288C) 36.2kb DNA fragment from chromosome 11.    50  0.034  1
AZ923598|AZ923598.1 4908.gf21i19.s1 Saccharomyces cariocanus UFRJ 50791 Saccharomyces cariocanus genomic clone 4908.gf21i19.s1, DNA sequence.    48  0.13  1
BF824319|BF824319.1 NcEST3a21h12.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.27  2
BG235080|BG235080.1 NcEST3a40b01.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.29  2
BF249095|BF249095.1 NcEST3a07a05.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.29  2
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082617_1(EF082617|pid:none) Picea sitchensis clone WS0299_E22 ...   124   2e-27
AY857484_1(AY857484|pid:none) Suberites domuncula S27 mRNA, comp...   123   5e-27
BT051468_1(BT051468|pid:none) Medicago truncatula clone MTYF1_F2...   122   7e-27
DQ241850_1(DQ241850|pid:none) Solanum tuberosum clone 187G01 rib...   121   1e-26
BT053528_1(BT053528|pid:none) Medicago truncatula clone MTYFP_FQ...   121   1e-26
EF146224_1(EF146224|pid:none) Populus trichocarpa clone WS0116_F...   121   2e-26
DQ673404_1(DQ673404|pid:none) Diaphorina citri putative ribosoma...   120   3e-26
EF179453_1(EF179453|pid:none) Xenopsylla cheopis clone XC-86 rib...   120   3e-26
(Q9M2F1) RecName: Full=40S ribosomal protein S27-2;  &AF083336_1...   120   4e-26
AL137898_1(AL137898|pid:none) Arabidopsis thaliana DNA chromosom...   120   4e-26
protein update 2009. 6.15
PSORT 

 psg: 0.54  gvh: 0.34  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.56  mip: 0.04
 nuc: 0.05  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSL256 is mit
5' end seq. ID SSL256F
5' end seq. 
>SSL256F.Seq
AGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAA
GAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAAC
CATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGT
TATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAA
ATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTT----------
Length of 5' end seq. 287
3' end seq. ID SSL256Z
3' end seq. 
>SSL256Z.Seq
----------CGAGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAA
ACATAAATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCA
CGGTTGTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTC
ATGTTCAACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCG
TTTAAGACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTT
TTTAATAGAAAATAAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATAT
Length of 3' end seq. 342
Connected seq. ID SSL256P
Connected seq. 
>SSL256P.Seq
AGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAA
GAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAAC
CATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGT
TATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAA
ATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTT----------CGA
GAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAAG
AGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAACC
ATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGTT
ATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAAA
TCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAATAGAAAAT
AAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATAT
Length of connected seq. 629
Full length Seq ID -
Full length Seq. -
Length of full length seq. -