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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL255
Library SS
(Link to library)
Clone ID SSL255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID SSL255Z
(Link to Original site)
Representative DNA sequence 
>SSL255 (SSL255Q) /CSM/SS/SSL2-C/SSL255Q.Seq.d/
XXXXXXXXXXTATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGT
AAATGGTTCAAATGGTGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAA
AAATACTTTATACCTTATTGGTACAAGTCATTGTGCTGATATGGTGGTTCCAACTTCAGT
TTCACCTCCAACTNTTGNTCAAGCACAACAAATTATTTTTGAATTCATCCAAGNTAATAT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAATAAAATTAAAATATCCAATG
TCCAA
sequence update 1998. 4.22
Translated Amino Acid sequence 
---mvvliqnhplliipym*MVQMVNGTILQSYQVMQMLKILYTLLVQVIVLIWWFQLQF
HLQLLXKHNKLFLNSSKXIFKKKKKKKKKNNKNKIKISNVQ
Translated Amino Acid sequence (All Frames) 
Frame A:
---mvvliqnhplliipym*MVQMVNGTILQSYQVMQMLKILYTLLVQVIVLIWWFQLQF
HLQLLXKHNKLFLNSSKXIFKKKKKKKKKNNKNKIKISNVQ


Frame B:
---wwy*srtilc**ylickwfkw*maqscnltr*ckc*kyfipywykslc*yggsnfsf
tsnxxssttnyf*ihpx*ylkkkkkkkkkiikiklkypms


Frame C:
---gginpepssvdntlyvngsngewhnlailpgnanakntlyligtshcadmvvptsvs
pptxxqaqqiifefiqxni*kkkkkkkkk**k*n*niqcp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL255 (SSL255Q) /CSM/SS/SSL2-C/SSL255Q.Seq.d/                        442   e-123
SSM567 (SSM567Q) /CSM/SS/SSM5-C/SSM567Q.Seq.d/                        402   e-111
SSL659 (SSL659Q) /CSM/SS/SSL6-C/SSL659Q.Seq.d/                        402   e-111
SSK766 (SSK766Q) /CSM/SS/SSK7-C/SSK766Q.Seq.d/                        402   e-111
SSH309 (SSH309Q) /CSM/SS/SSH3-A/SSH309Q.Seq.d/                        402   e-111
SSC669 (SSC669Q) /CSM/SS/SSC6-C/SSC669Q.Seq.d/                        402   e-111
SSC637 (SSC637Q) /CSM/SS/SSC6-B/SSC637Q.Seq.d/                        402   e-111
SSB272 (SSB272Q) /CSM/SS/SSB2-C/SSB272Q.Seq.d/                        402   e-111
SSB182 (SSB182Q) /CSM/SS/SSB1-D/SSB182Q.Seq.d/                        402   e-111
SLJ179 (SLJ179Q) /CSM/SL/SLJ1-D/SLJ179Q.Seq.d/                        402   e-111
own update 2003.10.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ005427|AJ005427.1 Lysiphlebus fabarum mitochondrial DNA for tRNA-Ser(UCN) gene and  partial cytb, ND1 genes.    44  0.009  3
AL262761|AL262761.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 062J21 of library G from Tetraodon nigroviridis.    38  0.038  2
AX346056|AX346056.1 Sequence 1127 from Patent WO0200928.          48  0.055  2
AF520217|AF520217.1 Tripneustes ventricosus isolate Sao Tome 107 bindin gene, partial cds.    48  0.061  1
AZ748654|AZ748654.1 RPCI-24-65M7.TJ RPCI-24 Mus musculus genomic clone RPCI-24-65M7, DNA sequence.    46  0.24  1
AC097074|AC097074.5 Rattus norvegicus clone CH230-43O14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.24  1
BH328654|BH328654.1 CH230-124J3.TJB CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-124J3, DNA sequence.    46  0.24  1
AX346057|AX346057.1 Sequence 1128 from Patent WO0200928.          46  0.24  1
AB049976|AB049976.1 Homo sapiens genes for alpha-lactalbumin, olfactory receptor like protein, complete cds.    48  0.26  2
BX567359|BX567359.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse87e10_p1c.    38  0.27  2
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...    46   5e-04
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...    42   0.009
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...    41   0.012
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...    40   0.034
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...    39   0.057
AL021808_1(AL021808|pid:none) Human DNA sequence from clone XXba...    39   0.057
BC104722_1(BC104722|pid:none) Rattus norvegicus protease, serine...    35   0.63
(Q9QXE5) RecName: Full=Thymus-specific serine protease;         ...    35   0.63
T19048(T19048;T21307) probable Pro-X carboxypeptidase F23B2.12 -...    33   4.1
CU914166_25(CU914166|pid:none) Ralstonia solanacearum strain IPO...    32   7.0
protein update 2009. 6.15
PSORT 

 psg: 0.81  gvh: 0.50  alm: 0.27  top: 0.67  tms: 0.07  mit: 0.40  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.16  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSL255 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL255Z
3' end seq. 
>SSL255Z.Seq
----------TATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGT
AAATGGTTCAAATGGTGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAA
AAATACTTTATACCTTATTGGTACAAGTCATTGTGCTGATATGGTGGTTCCAACTTCAGT
TTCACCTCCAACTNTTGNTCAAGCACAACAAATTATTTTTGAATTCATCCAAGNTAATAT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAATAAAATTAAAATATCCAATG
TCCAA
Length of 3' end seq. 295
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -