NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL253
Library SS
(Link to library)
Clone ID SSL253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02668-1
Original site URL
Representative seq. ID SSL253E
(Link to Original site)
Representative DNA sequence 
>SSL253 (SSL253Q) /CSM/SS/SSL2-C/SSL253Q.Seq.d/
ATAACTCTATCAATTTCAAAAAATAATAATAATAATAATAACAATTAAAAATGACATTAA
TTAGATGTATTCAAAGTATTGGAAACGTATCAAATGTTATGAATAAAGCAACAATAAATA
CTGACAATAACATCAATAACAATAACAATATTAATTTCTCAAATAATCAAACAACATACG
TAGTTACAAAGGATCAAGGCCAAACCTGTCCAATTTCCACAACTGATTGCGGATGTGGCC
CATCACCAAAACCAGATCCACAACCAAGTCATCATGTTTATATGATGTAAAAAAATTATA
ACTTTTTTTTAAAAGTGTAAACTATGTAAAAAAAAAATAAAAACTATATTTGTTGTCTAT
TTAATATTAAATAAAAAAAAAAAA
sequence update 1999. 6.25
Translated Amino Acid sequence 
nsinfkk******QLKMTLIRCIQSIGNVSNVMNKATINTDNNINNNNNINFSNNQTTYV
VTKDQGQTCPISTTDCGCGPSPKPDPQPSHHVYMM*knynfflkv*tm*kknknyicclf
nik*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
itlsisknnnnnnnn*k*h*ldvfkvletyqml*ikqq*iltitsititilisqiikqht
*lqrikakpvqfpqliadvahhqnqihnqvimfi*ckkiitff*kcklckkkiktifvvy
lilnkkkk


Frame B:
*lyqfqkiiiiiitikndin*myskywkrikcye*snnky*q*hq*q*qy*flk*snnir
sykgsrpnlsnfhn*lrmwpitktrsttkssclydvkkl*lffksvnyvkkk*klyllsi
*y*ikkk


Frame C:
nsinfkk******QLKMTLIRCIQSIGNVSNVMNKATINTDNNINNNNNINFSNNQTTYV
VTKDQGQTCPISTTDCGCGPSPKPDPQPSHHVYMM*knynfflkv*tm*kknknyicclf
nik*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL253 (SSL253Q) /CSM/SS/SSL2-C/SSL253Q.Seq.d/                        498   e-140
SSK633 (SSK633Q) /CSM/SS/SSK6-B/SSK633Q.Seq.d/                        498   e-140
SSG292 (SSG292Q) /CSM/SS/SSG2-D/SSG292Q.Seq.d/                        498   e-140
AFG279 (AFG279Q) /CSM/AF/AFG2-D/AFG279Q.Seq.d/                        490   e-138
SSD443 (SSD443Q) /CSM/SS/SSD4-B/SSD443Q.Seq.d/                        476   e-133
SSG827 (SSG827Q) /CSM/SS/SSG8-B/SSG827Q.Seq.d/                        470   e-132
SSG679 (SSG679Q) /CSM/SS/SSG6-D/SSG679Q.Seq.d/                        440   e-123
SSJ751 (SSJ751Q) /CSM/SS/SSJ7-C/SSJ751Q.Seq.d/                        347   8e-95
VSG584 (VSG584Q) /CSM/VS/VSG5-D/VSG584Q.Seq.d/                         44   0.002
VHI650 (VHI650Q) /CSM/VH/VHI6-C/VHI650Q.Seq.d/                         44   0.002
own update 2002.12.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U29872|U29872.1 Neocallimastix patriciarum cellobiohydrolase precursor (celA) mRNA, complete cds.    44  0.032  2
BH134712|BH134712.1 ENTOL94TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.058  2
AJ293885|AJ293885.2 Staphylococcus warneri proM gene, proC gene, proD gene, spw1 gene  and msrw1 gene.    44  0.081  2
CG065803|CG065803.1 PUJGJ64TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0662K08, genomic survey sequence.    44  0.21  2
AC044905|AC044905.2 Homo sapiens chromosome 2 clone RP11-700D19 map 2, WORKING DRAFT SEQUENCE, 22 unordered pieces.    46  0.25  3
BX004842|BX004842.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.30  3
AL954688|AL954688.9 Zebrafish DNA sequence from clone CH211-212L1 in linkage group 4.    46  0.32  1
AL446263|AL446263.1 Paramecium tetraurelia sequence M04A01r of the end of plasmid  PT004A01.    46  0.32  1
AC141775|AC141775.1 Apis mellifera clone CH224-63A6, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46  0.32  1
AL590083|AL590083.8 Human DNA sequence from clone RP11-475D8 on chromosome X Contains a  novel transcript, the GPR23 gene for G protein-coupled receptor 23  and a pseudogene similar to ribosomal protein L7.    50  0.39  2
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q2HDJ0) RecName: Full=Probable lysosomal cobalamin transporter;       26   5.1
AF412111_1(AF412111|pid:none) Arabidopsis thaliana AT4g12480/T1P...    32   5.4
protein update 2009. 7. 9
PSORT 

 psg: 0.79  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSL253 is nuc
5' end seq. ID SSL253F
5' end seq. 
>SSL253F.Seq
ATAACTCTATCAATTTCAAAAAATAATAATAATAATAATAACAATTAAAAATGACATTAA
TTAGATGTATTCAAAGTATTGGAAACGTATCAAATGTTATGAATAAAGCAACAATAAATA
CTGACAATAACATCAATAACAATAACAATATTAATTTCTCAAATAATCAAACAACATACG
TAGTTACAAAGGATCAAGGCCAAACCTGTCCAATTTCCACAACTGATTGCGGATGTGGCC
CATCACCAAAACCAGATCCACAACCAAGTCATCATGTTTATATGATGTAAAAAAATTATA
ACTTTTTTTTAAAAGTGTAAACTATGTAAAAAAAAAATAAAAACTATATTTGTTGTCTAT
TTAATAT----------
Length of 5' end seq. 367
3' end seq. ID SSL253Z
3' end seq. 
>SSL253Z.Seq
----------AATTTCTCAAATAATCAAACAACATACGTAGTTACAAAGGATCAAGGCCA
AACCTGTCCAATTTCCACAACTGATTGCGGATGTGGCCCATCACCAAAACCAGATCCACA
ACCAAGTCATCATGTTTATATGATGTAAAAAAATTATAACTTTTTTTTAAAAGTGTAAAC
TATGTAAAAAAAAAATAAAAACTATATTTGTTGTCTATTTAATATTAAATAAAAAAAAAA
AA
Length of 3' end seq. 232
Connected seq. ID SSL253P
Connected seq. 
>SSL253P.Seq
ATAACTCTATCAATTTCAAAAAATAATAATAATAATAATAACAATTAAAAATGACATTAA
TTAGATGTATTCAAAGTATTGGAAACGTATCAAATGTTATGAATAAAGCAACAATAAATA
CTGACAATAACATCAATAACAATAACAATATTAATTTCTCAAATAATCAAACAACATACG
TAGTTACAAAGGATCAAGGCCAAACCTGTCCAATTTCCACAACTGATTGCGGATGTGGCC
CATCACCAAAACCAGATCCACAACCAAGTCATCATGTTTATATGATGTAAAAAAATTATA
ACTTTTTTTTAAAAGTGTAAACTATGTAAAAAAAAAATAAAAACTATATTTGTTGTCTAT
TTAATAT----------AATTTCTCAAATAATCAAACAACATACGTAGTTACAAAGGATC
AAGGCCAAACCTGTCCAATTTCCACAACTGATTGCGGATGTGGCCCATCACCAAAACCAG
ATCCACAACCAAGTCATCATGTTTATATGATGTAAAAAAATTATAACTTTTTTTTAAAAG
TGTAAACTATGTAAAAAAAAAATAAAAACTATATTTGTTGTCTATTTAATATTAAATAAA
AAAAAAAAA
Length of connected seq. 599
Full length Seq ID SSL253E
Full length Seq. 
>SSL253E.Seq
ATAACTCTATCAATTTCAAAAAATAATAATAATAATAATAACAATTAAAAATGACATTAA
TTAGATGTATTCAAAGTATTGGAAACGTATCAAATGTTATGAATAAAGCAACAATAAATA
CTGACAATAACATCAATAACAATAACAATATTAATTTCTCAAATAATCAAACAACATACG
TAGTTACAAAGGATCAAGGCCAAACCTGTCCAATTTCCACAACTGATTGCGGATGTGGCC
CATCACCAAAACCAGATCCACAACCAAGTCATCATGTTTATATGATGTAAAAAAATTATA
ACTTTTTTTTAAAAGTGTAAACTATGTAAAAAAAAAATAAAAACTATATTTGTTGTCTAT
TTAATATTAAATAAAAAAAAAAAA
Length of full length seq. 384