>SSL245 (SSL245Q) /CSM/SS/SSL2-B/SSL245Q.Seq.d/
CTCTAACATTTTTTTTTAATTAAATTTTCAAAAACAAATAAATAAAATATTAATACAAAA
AGTAGTAAAAAACTTTCAAACAACATCAAAAATAAAAAATGAACTCTTTCTTTGACCTTT
TCAAATCACCATCAAAAAATACCAAAACTGGTTTATCAAGTTCAATGGACTCAATAACTG
AACCAAAATCAAATATGTCTTCACCATCTTTAAATTCATCCACATCAAGTTTATCTTCAC
CATCTTTAAATTCATCTCCATCATTAAGCTCATCAACTGATGGTGCTTTCATAATGAGAA
CAACATCTTCTCCATCAATTGATATTCCAAATAGAGAATCCTCTTACTTTAGAATGCTCC
AAGTTGTTGAAGCTGXXXXXXXXXX

ltfffn*ifknk*iky*ykk**ktfkqhqk*KMNSFFDLFKSPSKNTKTGLSSSMDSITE
PKSNMSSPSLNSSTSSLSSPSLNSSPSLSSSTDGAFIMRTTSSPSIDIPNRESSYFRMLQ
VVEA---

Frame A:
l*hfflikfsktnk*nintksskklsnniknkk*tlsltfsnhhqkipklvyqvqwtq*l
nqnqiclhhl*ihphqvylhhl*ihlhh*ahqlmvls**eqhllhqlifqienpltlecs
kllk---


Frame B:
sniff*lnfqkqinkiliqkvvknfqttskiknelfl*pfqitikkyqnwfikfnglnn*
tkikyvftifkfihikfiftifkfisiiklin*wcfhnennifsin*ysk*rilll*nap
sc*s---


Frame C:
ltfffn*ifknk*iky*ykk**ktfkqhqk*KMNSFFDLFKSPSKNTKTGLSSSMDSITE
PKSNMSSPSLNSSTSSLSSPSLNSSPSLSSSTDGAFIMRTTSSPSIDIPNRESSYFRMLQ
VVEA---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK403 (VSK403Q) /CSM/VS/VSK4-A/VSK403Q.Seq.d/                        547   e-155
VSH642 (VSH642Q) /CSM/VS/VSH6-B/VSH642Q.Seq.d/                        547   e-155
VSH314 (VSH314Q) /CSM/VS/VSH3-A/VSH314Q.Seq.d/                        547   e-155
VSD264 (VSD264Q) /CSM/VS/VSD2-C/VSD264Q.Seq.d/                        547   e-155
SSL245 (SSL245Q) /CSM/SS/SSL2-B/SSL245Q.Seq.d/                        547   e-155
SSK341 (SSK341Q) /CSM/SS/SSK3-B/SSK341Q.Seq.d/                        547   e-155
SSD559 (SSD559Q) /CSM/SS/SSD5-C/SSD559Q.Seq.d/                        547   e-155
SSC584 (SSC584Q) /CSM/SS/SSC5-D/SSC584Q.Seq.d/                        547   e-155
SSA325 (SSA325Q) /CSM/SS/SSA3-B/SSA325Q.Seq.d/                        547   e-155
SSK549 (SSK549Q) /CSM/SS/SSK5-C/SSK549Q.Seq.d/                        523   e-148

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX767518|AX767518.1 Sequence 166 from Patent WO03044226.          36  0.021  4
AZ549014|AZ549014.1 ENTFR48TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.060  2
AC145023|AC145023.4 Medicago truncatula clone mth2-30j24, complete sequence.    40  0.074  6
AV082420|AV082420.1 Mus musculus adult male tongue cDNA, partial sequence, clone 2300004K05.    34  0.27  2
BH911620|BH911620.1 SALK_069783.53.50.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_069783.53.50.x, DNA sequence.    46  0.31  1
AB010068|AB010068.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18P6.    46  0.31  1
AL691521|AL691521.7 Zebrafish DNA sequence from clone BUSM1-186K12 in linkage group 7.    36  1.3  3
AL591476|AL591476.7 Zebrafish DNA sequence from clone XX-263J20 on chromosome 7 Contains a gene for a novel kinase with a CNH domain, one complete and part  of five genes for novel proteins similar to novel immune-type  receptors (nitr), a novel gene similar to nitr4 and part of a novel  gene similar to nitr1.    36  1.5  4
AL732544|AL732544.12 Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7.    36  1.9  3
AX767442|AX767442.1 Sequence 90 from Patent WO03044226.           30  2.7  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.033
AL844506_47(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.22
A54138(A54138) acidic repetitive protein arp1 - Tetrahymena ther...    35   0.63
AB276041_1(AB276041|pid:none) Halocynthia roretzi mRNA for HrUra...    34   1.8
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    33   2.4
CP001026_1415(CP001026|pid:none) Burkholderia ambifaria MC40-6 c...    33   2.4
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    33   2.4
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    33   2.4
CP000304_3892(CP000304|pid:none) Pseudomonas stutzeri A1501, com...    33   3.1
AY395259_1(AY395259|pid:none) Hyalomma anatolicum excavatum calr...    33   3.1

 psg: 0.56  gvh: 0.52  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system

>> prediction for SSL245 is cyt

>SSL245F.Seq
CTCTAACATTTTTTTTTAATTAAATTTTCAAAAACAAATAAATAAAATATTAATACAAAA
AGTAGTAAAAAACTTTCAAACAACATCAAAAATAAAAAATGAACTCTTTCTTTGACCTTT
TCAAATCACCATCAAAAAATACCAAAACTGGTTTATCAAGTTCAATGGACTCAATAACTG
AACCAAAATCAAATATGTCTTCACCATCTTTAAATTCATCCACATCAAGTTTATCTTCAC
CATCTTTAAATTCATCTCCATCATTAAGCTCATCAACTGATGGTGCTTTCATAATGAGAA
CAACATCTTCTCCATCAATTGATATTCCAAATAGAGAATCCTCTTACTTTAGAATGCTCC
AAGTTGTTGAAGCTG----------