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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL239
Library SS
(Link to library)
Clone ID SSL239
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10097-1
Original site URL
Representative seq. ID SSL239P
(Link to Original site)
Representative DNA sequence 
>SSL239 (SSL239Q) /CSM/SS/SSL2-B/SSL239Q.Seq.d/
ATATATTATAACTTTGAAAATGTTATTTTCCAAAATTTTATTGGCCTTAGCCTTAATTAT
CTCAGTCGTTTATGTTAACGCAGTTCCAGACATTTGCGTACTCTCTTCTGATTGCTCAAA
CACTCAATATTGTTCAGGAGGTTATTGTGTTTCATGTAGATCTAATAACGATTGTGGATT
AAACGAGTTCTGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCTGTAAAAAATT
CGATAAGGATGGTGATGATTGTATTGCTTACAACAACGTCGAAGCTTCTAATCTTTTAAC
CTCAAATTCAACCAAATGTGCATAXXXXXXXXXXTATGCTAACGGTGGTTCCTACACTGC
TGAAGGTAAAGGTGCCCCAAGAACTTGTGTATTCCCAGGTAAATTCGCAACTGTCCACTC
TTCAAGCTGGTCTGCTGGTAGATACTATGAAGAACCAATCCAAGTTTGGTTAGCAATTTT
CTTCTGTTTAATTGTTTTAATTTTAGCTTTCCACGTCATGGGTTTCTTAAAGAAATAATA
AATATCGATTTGTAAAATAGTATTTCTTTTTTTTGTAATTAATACTATATA
sequence update 1999. 1.17
Translated Amino Acid sequence 
YIITLKMLFSKILLALALIISVVYVNAVPDICVLSSDCSNTQYCSGGYCVSCRSNNDCGL
NEFCSSNIFDLNEFGSCKKFDKDGDDCIAYNNVEASNLLTSNSTKCA---

---YANGGSYTAEGKGAPRTCVFPGKFATVHSSSWSAGRYYEEPIQVWLAIFFCLIVLIL
AFHVMGFLKK**isickivflffvinti
Translated Amino Acid sequence (All Frames) 
Frame A:
iyynfenvifqnfiglslnylsrlc*rssrhlrtlf*llkhsilfrrllcfm*i**rlwi
krvlfikyfrsq*iwfl*kir*gw**lyclqqrrsf*sfnlkfnqmci---

---YANGGSYTAEGKGAPRTCVFPGKFATVHSSSWSAGRYYEEPIQVWLAIFFCLIVLIL
AFHVMGFLKK**isickivflffvinti

Frame B:
YIITLKMLFSKILLALALIISVVYVNAVPDICVLSSDCSNTQYCSGGYCVSCRSNNDCGL
NEFCSSNIFDLNEFGSCKKFDKDGDDCIAYNNVEASNLLTSNSTKCA---

---mltvvptllkvkvpqelvysqvnsqlstlqagllvdtmknqskfg*qfssv*lf*f*
lstswvs*rnnkyrfvk*yfffl*lily

Frame C:
il*l*kcyfpkfywp*p*lsqsfmltqfqtfayslliaqtlnivqevivfhvdlitivd*
tssvhqifsismnlvpvknsirmvmivlltttskllif*pqiqpnvh---

---c*rwflhc*r*rcpknlcipr*irncplfklvcw*il*rtnpslvsnfllfncfnfs
fprhgflkeiinidl*nsisffcn*yyi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL239 (SSL239Q) /CSM/SS/SSL2-B/SSL239Q.Seq.d/                       1065   0.0
SSL240 (SSL240Q) /CSM/SS/SSL2-B/SSL240Q.Seq.d/                        642   0.0
SSB156 (SSB156Q) /CSM/SS/SSB1-C/SSB156Q.Seq.d/                        462   e-129
SSA794 (SSA794Q) /CSM/SS/SSA7-D/SSA794Q.Seq.d/                        462   e-129
FC-IC0108 (FC-IC0108Q) /CSM/FC-IC/FC-IC0108Q.Seq.d/                   442   e-123
SSG129 (SSG129Q) /CSM/SS/SSG1-B/SSG129Q.Seq.d/                         44   0.002
VSI312 (VSI312Q) /CSM/VS/VSI3-A/VSI312Q.Seq.d/                         42   0.009
VSG309 (VSG309Q) /CSM/VS/VSG3-A/VSG309Q.Seq.d/                         42   0.009
VSF890 (VSF890Q) /CSM/VS/VSF8-D/VSF890Q.Seq.d/                         42   0.009
VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/                         42   0.009
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF439352|AF439352.1 Choristoneura fumiferana granulovirus, partial genome.    46  0.039  3
BX571841|BX571841.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48  0.12  2
AF175768|AF175768.1 Dictyostelium discoideum SAPLIP C protein mRNA, complete cds.    48  0.12  1
AC106464|AC106464.3 Rattus norvegicus clone CH230-209K23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48  0.12  1
AL365228|AL365228.7 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP13-90J15.    38  0.27  2
AJ512751|AJ512751.1 Anopheles dirus A mitochondrial partial COII gene for cytochrome  oxidase subunit II.    46  0.49  1
U94289|U94289.1 Anopheles balabacensis cytochrome c oxidase subunit II (COII) gene, mitochondrial gene encoding mitochondrial protein, partial cds.    46  0.49  1
AF417743|AF417743.1 Anopheles dirus cytochrome c oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    46  0.49  1
BX323038|BX323038.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.53  2
AL353741|AL353741.16 Human DNA sequence from clone RP11-575C20 on chromosome 9.    46  1.0  3
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42830_5(U42830|pid:none) Caenorhabditis elegans cosmid C53B7, c...    40   0.047
T28802(T28802) hypothetical protein C53B7.3 - Caenorhabditis ele...    40   0.047
AF214523_1(AF214523|pid:none) Drosophila melanogaster SP460 mRNA...    39   0.14
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot...    39   0.14
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso...    37   0.52
AF126830_1(AF126830|pid:none) Toxocara canis C-type lectin Tc-ct...    36   0.68
BC055171_1(BC055171|pid:none) Danio rerio zgc:63629, mRNA (cDNA ...    36   0.68
(O35806) RecName: Full=Latent-transforming growth factor beta-bi...    36   0.89
CP001131_3388(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    35   1.5
CP001359_3451(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    35   1.5
protein update 2009. 6.15
PSORT 

 psg: 0.97  gvh: 0.64  alm: 0.14  top: 0.20  tms: 0.13  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SSL239 is end
5' end seq. ID SSL239F
5' end seq. 
>SSL239F.Seq
ATATATTATAACTTTGAAAATGTTATTTTCCAAAATTTTATTGGCCTTAGCCTTAATTAT
CTCAGTCGTTTATGTTAACGCAGTTCCAGACATTTGCGTACTCTCTTCTGATTGCTCAAA
CACTCAATATTGTTCAGGAGGTTATTGTGTTTCATGTAGATCTAATAACGATTGTGGATT
AAACGAGTTCTGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCTGTAAAAAATT
CGATAAGGATGGTGATGATTGTATTGCTTACAACAACGTCGAAGCTTCTAATCTTTTAAC
CTCAAATTCAACCAAATGTGCATA----------
Length of 5' end seq. 324
3' end seq. ID SSL239Z
3' end seq. 
>SSL239Z.Seq
----------TATGCTAACGGTGGTTCCTACACTGCTGAAGGTAAAGGTGCCCCAAGAAC
TTGTGTATTCCCAGGTAAATTCGCAACTGTCCACTCTTCAAGCTGGTCTGCTGGTAGATA
CTATGAAGAACCAATCCAAGTTTGGTTAGCAATTTTCTTCTGTTTAATTGTTTTAATTTT
AGCTTTCCACGTCATGGGTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGTATT
TCTTTTTTTTGTAATTAATACTATATA
Length of 3' end seq. 257
Connected seq. ID SSL239P
Connected seq. 
>SSL239P.Seq
ATATATTATAACTTTGAAAATGTTATTTTCCAAAATTTTATTGGCCTTAGCCTTAATTAT
CTCAGTCGTTTATGTTAACGCAGTTCCAGACATTTGCGTACTCTCTTCTGATTGCTCAAA
CACTCAATATTGTTCAGGAGGTTATTGTGTTTCATGTAGATCTAATAACGATTGTGGATT
AAACGAGTTCTGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCTGTAAAAAATT
CGATAAGGATGGTGATGATTGTATTGCTTACAACAACGTCGAAGCTTCTAATCTTTTAAC
CTCAAATTCAACCAAATGTGCATA----------TATGCTAACGGTGGTTCCTACACTGC
TGAAGGTAAAGGTGCCCCAAGAACTTGTGTATTCCCAGGTAAATTCGCAACTGTCCACTC
TTCAAGCTGGTCTGCTGGTAGATACTATGAAGAACCAATCCAAGTTTGGTTAGCAATTTT
CTTCTGTTTAATTGTTTTAATTTTAGCTTTCCACGTCATGGGTTTCTTAAAGAAATAATA
AATATCGATTTGTAAAATAGTATTTCTTTTTTTTGTAATTAATACTATATA
Length of connected seq. 581
Full length Seq ID -
Full length Seq. -
Length of full length seq. -