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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL238
Library SS
(Link to library)
Clone ID SSL238
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12265-1
Original site URL
Representative seq. ID SSL238Z
(Link to Original site)
Representative DNA sequence 
>SSL238 (SSL238Q) /CSM/SS/SSL2-B/SSL238Q.Seq.d/
XXXXXXXXXXGTATTCTCAGCCACTGATATTAGATATTAANTAANCCAAAAAAAACANTA
AAAAAATCCCCAAAAACTATTTAAAATTACTTTATTAATTAATTAATTAAATATTTACAA
AAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 4.22
Translated Amino Acid sequence 
---fsatdiry*xxqkkx*knpqklfkitllin*LNIYKKKKKKKTKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
---ysqplildix*xkknxkkipknylklly*lin*iftkkkkkkklkkkkkkk


Frame B:
---ilsh*y*ilxxpkktxkkspkti*nyfin*likylqkkkkkkn*kkkkkkk


Frame C:
---fsatdiry*xxqkkx*knpqklfkitllin*LNIYKKKKKKKTKKKKKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL238 (SSL238Q) /CSM/SS/SSL2-B/SSL238Q.Seq.d/                         84   7e-16
SSJ675 (SSJ675Q) /CSM/SS/SSJ6-D/SSJ675Q.Seq.d/                         84   7e-16
SSJ273 (SSJ273Q) /CSM/SS/SSJ2-D/SSJ273Q.Seq.d/                         84   7e-16
SSG613 (SSG613Q) /CSM/SS/SSG6-A/SSG613Q.Seq.d/                         84   7e-16
SSE756 (SSE756Q) /CSM/SS/SSE7-C/SSE756Q.Seq.d/                         84   7e-16
SSC222 (SSC222Q) /CSM/SS/SSC2-A/SSC222Q.Seq.d/                         84   7e-16
SSG168 (SSG168Q) /CSM/SS/SSG1-C/SSG168Q.Seq.d/                         78   4e-14
SSH586 (SSH586Q) /CSM/SS/SSH5-D/SSH586Q.Seq.d/                         76   2e-13
SSF357 (SSF357Q) /CSM/SS/SSF3-C/SSF357Q.Seq.d/                         74   7e-13
SSM627 (SSM627Q) /CSM/SS/SSM6-B/SSM627Q.Seq.d/                         62   3e-09
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    54  5e-04  2
AL162715|AL162715.12 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-307J16.    42  0.007  2
AC109618|AC109618.4 Mus musculus clone RP23-478L3, WORKING DRAFT SEQUENCE, 16 ordered pieces.    50  0.008  1
AC113294|AC113294.3 Mus musculus clone RP23-419I1, WORKING DRAFT SEQUENCE, 22 unordered pieces.    50  0.008  1
AP003161|AP003161.1 Homo sapiens genomic DNA, chromosome 1p36.2-p36 clone:dJ266I16, WORKING DRAFT SEQUENCE, 6 unordered pieces.    50  0.008  1
AC096104|AC096104.6 Rattus norvegicus clone CH230-27J15, WORKING DRAFT SEQUENCE, 1 ordered piece.    50  0.008  1
AC131941|AC131941.1 Mus musculus chromosome 1 clone RP23-109A19, complete sequence.    50  0.008  1
AC121924|AC121924.3 Mus musculus chromosome 2 clone RP24-198P16, complete sequence.    50  0.008  1
AC101715|AC101715.4 Mus musculus clone RP23-283P17, WORKING DRAFT SEQUENCE, 5 unordered pieces.    50  0.008  1
BH154746|BH154746.1 ENTRN81TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    50  0.008  1
dna update 2003. 8.10
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 68,172,704
protein update 2009. 6.15
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL238Z
3' end seq. 
>SSL238Z.Seq
----------GTATTCTCAGCCACTGATATTAGATATTAANTAANCCAAAAAAAACANTA
AAAAAATCCCCAAAAACTATTTAAAATTACTTTATTAATTAATTAATTAAATATTTACAA
AAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 156
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -