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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL237
Library SS
(Link to library)
Clone ID SSL237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08441-1
Original site URL
Representative seq. ID SSL237Z
(Link to Original site)
Representative DNA sequence 
>SSL237 (SSL237Q) /CSM/SS/SSL2-B/SSL237Q.Seq.d/
XXXXXXXXXXTTCATCGTGTAAAGTATAATAAAAGTGGTCGTGATCGTTTCTCAATTCCA
TTCTTTTTAGACCCATCTCTTAATTCAATTCCAAAATTAATTCCAAACTATGATCAACTA
AGCCAATTTGCTGATAAACCAGAAAGATGGGATAAACAAAATATTCATGAATTTGATGGT
ACCTATGGTCAATATTTTATTAAAAAAATTGGTCGTGTTTTTCCAGATTATGTTTATAAA
AAAAGTGGTGAATTAGTTTAAAACCCAAGAAAATTTTAAAAAAAAAAAATAATTATTTAA
ATAAATTATTTCAATATTATTTCAAAAAAAA
sequence update 1998. 4.22
Translated Amino Acid sequence 
---HRVKYNKSGRDRFSIPFFLDPSLNSIPKLIPNYDQLSQFADKPERWDKQNIHEFDGT
YGQYFIKKIGRVFPDYVYKKSGELV*nprkf*kkkiii*inyfniiskk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ssckv**kws*sflnsilfrpis*fnskinskl*stkpic**trkmg*tkys*i*wy
lwsify*knwscfsrlcl*kkw*islkpkkilkkknnylnklfqyyfkk


Frame B:
---HRVKYNKSGRDRFSIPFFLDPSLNSIPKLIPNYDQLSQFADKPERWDKQNIHEFDGT
YGQYFIKKIGRVFPDYVYKKSGELV*nprkf*kkkiii*inyfniiskk


Frame C:
---iv*siikvvvivsqfhsf*thlliqfqn*fqtmin*anllinqkdginkifmnlmvp
mvnillkklvvffqimfikkvvn*fktqenfkkkk*lfk*iisilfqkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM320 (SSM320Q) /CSM/SS/SSM3-A/SSM320Q.Seq.d/                        466   e-130
SSL237 (SSL237Q) /CSM/SS/SSL2-B/SSL237Q.Seq.d/                        466   e-130
SSF658 (SSF658Q) /CSM/SS/SSF6-C/SSF658Q.Seq.d/                        466   e-130
SSF611 (SSF611Q) /CSM/SS/SSF6-A/SSF611Q.Seq.d/                        466   e-130
SSH834 (SSH834Q) /CSM/SS/SSH8-B/SSH834Q.Seq.d/                        446   e-125
SSC762 (SSC762Q) /CSM/SS/SSC7-C/SSC762Q.Seq.d/                        446   e-125
SSD678 (SSD678Q) /CSM/SS/SSD6-D/SSD678Q.Seq.d/                        434   e-121
SFI637 (SFI637Q) /CSM/SF/SFI6-B/SFI637Q.Seq.d/                        329   2e-89
CFH272 (CFH272Q) /CSM/CF/CFH2-C/CFH272Q.Seq.d/                         40   0.020
VSD791 (VSD791Q) /CSM/VS/VSD7-D/VSD791Q.Seq.d/                         38   0.080
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.   379  e-132  4
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   379  e-131  4
BH679336|BH679336.1 BOHTH91TR BO_2_3_KB Brassica oleracea genomic clone BOHTH91, DNA sequence.    50  0.017  1
AE010629|AE010629.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 171 of 197 of the complete genome.    42  0.081  2
AZ549506|AZ549506.1 ENTFQ18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32  0.20  3
BQ834705|BQ834705.1 Po_ad_02E03_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_02E03 5' similar to AAG59792 P53-BINDING PROTEIN 1. Xenopus laevis (African clawed frog), mRNA sequence.    46  0.27  1
AF064864|AF064864.1 Homo sapiens chromosome 21q22.3 PAC 21L13, complete sequence.    46  0.27  1
BZ538665|BZ538665.1 OGALT80TM ZM2_0.7_1.5_KB Zea mays genomic clone ZMMBMa0090M16, DNA sequence.    46  0.27  1
B83706|B83706.1 CIT978SK-159N24.TP.2 CIT978SK Homo sapiens genomic clone 159N24, genomic survey sequence.    36  0.32  2
B83705|B83705.1 CIT978SK-159N24.TP.1 CIT978SK Homo sapiens genomic clone 159N24, genomic survey sequence.    36  0.32  2
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000117_4980(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    69   7e-11
CP000113_85(CP000113|pid:none) Myxococcus xanthus DK 1622, compl...    65   7e-10
CP000384_3475(CP000384|pid:none) Mycobacterium sp. MCS, complete...    38   0.13
DQ418879_1(DQ418879|pid:none) Glycine max cultivar Resnick senes...    37   0.28
AP007164_779(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    35   0.63
FB826953_1(FB826953|pid:none) Sequence 46226 from Patent WO20080...    35   1.1
EU963664_1(EU963664|pid:none) Zea mays clone 265382 gibberellin ...    35   1.1
CP001341_666(CP001341|pid:none) Arthrobacter chlorophenolicus A6...    34   1.4
CP000264_1140(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    34   1.8
AM270045_63(AM270045|pid:none) Aspergillus niger contig An03c004...    34   1.8
protein update 2009. 2. 3
PSORT 

 psg: 0.81  gvh: 0.45  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSL237 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL237Z
3' end seq. 
>SSL237Z.Seq
----------TTCATCGTGTAAAGTATAATAAAAGTGGTCGTGATCGTTTCTCAATTCCA
TTCTTTTTAGACCCATCTCTTAATTCAATTCCAAAATTAATTCCAAACTATGATCAACTA
AGCCAATTTGCTGATAAACCAGAAAGATGGGATAAACAAAATATTCATGAATTTGATGGT
ACCTATGGTCAATATTTTATTAAAAAAATTGGTCGTGTTTTTCCAGATTATGTTTATAAA
AAAAGTGGTGAATTAGTTTAAAACCCAAGAAAATTTTAAAAAAAAAAAATAATTATTTAA
ATAAATTATTTCAATATTATTTCAAAAAAAA
Length of 3' end seq. 321
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -