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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL234
Library SS
(Link to library)
Clone ID SSL234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12264-1
Original site URL
Representative seq. ID SSL234P
(Link to Original site)
Representative DNA sequence 
>SSL234 (SSL234Q) /CSM/SS/SSL2-B/SSL234Q.Seq.d/
CATTCACACAAGTAAAAAAATAAAAATAAAAAGATTATAAAAGAATATAAATCATCAATT
ACAATCAAAAAAATCACATTAATATACTGAATACTAAACAAAAAATTAAATAAACAAATA
AACAAACAAATTTTTTTTTAAAATAATATATCGATAAATAATAAAATGATCTCTAATAAA
ATATTTTCAAAGGCTACAAAATCAATTTTAACACTGGGAATAAAAAATAACAATATTAAT
AGAACATTTATAAGTTTAAATAATAATAATAAAGAAAATGAATTTAAAAGATTTCAAAAT
AGATTTGGACCATTTCCAGAATATGTAAAGATTGTTGAAGTTGGACCAAGAGATGGATTA
XXXXXXXXXXAATACGACCCTTCAACATTTTTNTACAACCCNGTTACAAATTCATTCATT
TTNCCTTGTCACATTGNTGGTTTAACTCAAAATGTTTTATCCTTTATTGAATGGGATTTT
AAAAATTCAAAAATAAATACTTNTAAAAATGTNGAAAGTTTTAAATNTTTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence 
hshk*knknkkiikeykssitikkitliy*ilnkklnkqinkqiff*NNISINNKMISNK
IFSKATKSILTLGIKNNNINRTFISLNNNNKENEFKRFQNRFGPFPEYVKIVEVGPRDGL
---

---YDPSTFXYNPVTNSFIXPCHIXGLTQNVLSFIEWDFKNSKINTXKNVESFKXLKKKK
KKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
hshk*knknkkiikeykssitikkitliy*ilnkklnkqinkqiff*NNISINNKMISNK
IFSKATKSILTLGIKNNNINRTFISLNNNNKENEFKRFQNRFGPFPEYVKIVEVGPRDGL
---

---nttlqhfxttxlqihsfxlvtlxv*lkmfypllngilkiqk*ilxkmxkvlnx*kkk
kkkkkkkkkkkk

Frame B:
ihtskkikikrl*kninhqlqskksh*ytey*tkn*ink*tnkfffkiiyr*iik*slik
yfqrlqnqf*hwe*kitiliehl*v*iiiikkmnlkdfkidldhfqnm*rllkldqemd-
--

---irpfnifxqpxykfihfxlshxwfnskcfily*mgf*kfknkyx*kcxkf*xfekkk
kkkkkkkkkkkk

Frame C:
ftqvkk*k*kdykri*iinynqknhinilntkqkik*tnkqtnfflk*yidk**ndl**n
ifkgykinfntgnkk*qy**niykfk****rk*i*kisk*iwtisrickdc*swtkrwi-
--

---YDPSTFXYNPVTNSFIXPCHIXGLTQNVLSFIEWDFKNSKINTXKNVESFKXLKKKK
KKKKKKKKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL234 (SSL234Q) /CSM/SS/SSL2-B/SSL234Q.Seq.d/                        589   e-167
CHB844 (CHB844Q) /CSM/CH/CHB8-B/CHB844Q.Seq.d/                        351   7e-96
CHB874 (CHB874Q) /CSM/CH/CHB8-D/CHB874Q.Seq.d/                        351   7e-96
VFC618 (VFC618Q) /CSM/VF/VFC6-A/VFC618Q.Seq.d/                        351   7e-96
SSL232 (SSL232Q) /CSM/SS/SSL2-B/SSL232Q.Seq.d/                        351   7e-96
SLH582 (SLH582Q) /CSM/SL/SLH5-D/SLH582Q.Seq.d/                        351   7e-96
SFG251 (SFG251Q) /CSM/SF/SFG2-C/SFG251Q.Seq.d/                        351   7e-96
CHB874 (CHB874Q) /CSM/CH/CHB8-D/CHB874Q.Seq.d/                        351   7e-96
CHB844 (CHB844Q) /CSM/CH/CHB8-B/CHB844Q.Seq.d/                        351   7e-96
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    56  2e-04  2
BI572036|BI572036.1 RH07371.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH07371 5, mRNA sequence.    46  8e-04  2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          40  0.001  5
AP005755|AP005755.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.001  2
AI063381|AI063381.1 GH03155.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03155 5prime similar to X13719: Drosophila melanogaster copia-specific 2.1-kb mRNA for 31-kD copia protein and 17-kD viral protease. CDS:354..1163; PID:g7747, mRNA sequence.    46  0.001  2
AI534743|AI534743.1 SD07749.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07749 5prime similar to X13719: Drosophila melanogaster copia-specific 2.1-kb mRNA for 31-kD copia protein and 17-kD viral protease. CDS:354..1163; PID:g7747, mRNA sequence.    46  0.001  2
BI572047|BI572047.1 RH07382.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH07382 5, mRNA sequence.    46  0.001  2
BI571083|BI571083.1 RH05901.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH05901 5, mRNA sequence.    46  0.002  2
BI613209|BI613209.1 RH42315.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH42315 5, mRNA sequence.    46  0.002  2
AI532687|AI532687.1 SD04275.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04275 5prime similar to M11240: D.melanogaster copia element inserted at white-apricot allele. CDS:432..4661; PID:g950318, mRNA sequence.    46  0.002  2
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8JZS7) RecName: Full=Probable 3-hydroxymethyl-3-methylglutaryl...    35   1.5
(Q29448) RecName: Full=Hydroxymethylglutaryl-CoA lyase, mitochon...    35   1.9
(Q8TB92) RecName: Full=Probable 3-hydroxymethyl-3-methylglutaryl...    33   4.2
AX643745_1(AX643745|pid:none) Sequence 4 from Patent WO02099093.       33   4.2
AK297191_1(AK297191|pid:none) Homo sapiens cDNA FLJ57397 complet...    33   4.2
AK127587_1(AK127587|pid:none) Homo sapiens cDNA FLJ45682 fis, cl...    33   4.2
AL646052_261(AL646052|pid:none) Ralstonia solanacearum GMI1000 c...    33   4.2
AK293856_1(AK293856|pid:none) Homo sapiens cDNA FLJ57911 complet...    33   4.2
CP000090_1450(CP000090|pid:none) Ralstonia eutropha JMP134 chrom...    33   5.5
AM260479_186(AM260479|pid:none) Ralstonia eutropha H16 chromosom...    33   5.5
protein update 2009. 6.15
PSORT 

 psg: 0.76  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.07
 nuc: 0.61  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial

>> prediction for SSL234 is nuc
5' end seq. ID SSL234F
5' end seq. 
>SSL234F.Seq
CATTCACACAAGTAAAAAAATAAAAATAAAAAGATTATAAAAGAATATAAATCATCAATT
ACAATCAAAAAAATCACATTAATATACTGAATACTAAACAAAAAATTAAATAAACAAATA
AACAAACAAATTTTTTTTTAAAATAATATATCGATAAATAATAAAATGATCTCTAATAAA
ATATTTTCAAAGGCTACAAAATCAATTTTAACACTGGGAATAAAAAATAACAATATTAAT
AGAACATTTATAAGTTTAAATAATAATAATAAAGAAAATGAATTTAAAAGATTTCAAAAT
AGATTTGGACCATTTCCAGAATATGTAAAGATTGTTGAAGTTGGACCAAGAGATGGATTA
----------
Length of 5' end seq. 360
3' end seq. ID SSL234Z
3' end seq. 
>SSL234Z.Seq
----------AATACGACCCTTCAACATTTTTNTACAACCCNGTTACAAATTCATTCATT
TTNCCTTGTCACATTGNTGGTTTAACTCAAAATGTTTTATCCTTTATTGAATGGGATTTT
AAAAATTCAAAAATAAATACTTNTAAAAATGTNGAAAGTTTTAAATNTTTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 208
Connected seq. ID SSL234P
Connected seq. 
>SSL234P.Seq
CATTCACACAAGTAAAAAAATAAAAATAAAAAGATTATAAAAGAATATAAATCATCAATT
ACAATCAAAAAAATCACATTAATATACTGAATACTAAACAAAAAATTAAATAAACAAATA
AACAAACAAATTTTTTTTTAAAATAATATATCGATAAATAATAAAATGATCTCTAATAAA
ATATTTTCAAAGGCTACAAAATCAATTTTAACACTGGGAATAAAAAATAACAATATTAAT
AGAACATTTATAAGTTTAAATAATAATAATAAAGAAAATGAATTTAAAAGATTTCAAAAT
AGATTTGGACCATTTCCAGAATATGTAAAGATTGTTGAAGTTGGACCAAGAGATGGATTA
----------AATACGACCCTTCAACATTTTTNTACAACCCNGTTACAAATTCATTCATT
TTNCCTTGTCACATTGNTGGTTTAACTCAAAATGTTTTATCCTTTATTGAATGGGATTTT
AAAAATTCAAAAATAAATACTTNTAAAAATGTNGAAAGTTTTAAATNTTTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 568
Full length Seq ID -
Full length Seq. -
Length of full length seq. -