>SSL229 (SSL229Q) /CSM/SS/SSL2-B/SSL229Q.Seq.d/
XXXXXXXXXXTTTTTTCTCTTTTCTTTTTTTTTTTTTTTTATAAAAAAAAAAATTATATA
TCAAATTTATTTTATATAATTTCAACTTTCACTTTTTATCCTTTTTCAAAAACAACAAAA
AAAAAAACCAACAACAACACAACAACTCAAATACATAGACAAGCCTCAAATACAAGTTGT
TTAATATATAAAATCTTAATTTGCATTATTGTTCAATAGCTATAAATATCAATTTTTTTG
TGTATAAATTTATCAAAAAAAAAAAAAAAAAAAAAAAAATTTAAT

---FSLFFFFFFYKKKNYISNLFYIISTFTFYPFSKTTKKKTNNNTTTQIHRQASNTSCL
IYKILICIIVQ*l*isiflcinlskkkkkkkkfn

Frame A:
---ffsflffffl*kkklyikfilynfnfhflsffknnkkknqqqhnnsnt*tslkyklf
ni*nlnlhycsiaininffvykfikkkkkkkki*


Frame B:
---FSLFFFFFFYKKKNYISNLFYIISTFTFYPFSKTTKKKTNNNTTTQIHRQASNTSCL
IYKILICIIVQ*l*isiflcinlskkkkkkkkfn


Frame C:
---flfsfffffikkkiiyqiyfi*fqlslfilfqkqqkkkptttqqlkyidkpqiqvv*
yiks*fallfnsykyqffcv*iyqkkkkkkknl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL229 (SSL229Q) /CSM/SS/SSL2-B/SSL229Q.Seq.d/                        291   3e-78
SSJ492 (SSJ492Q) /CSM/SS/SSJ4-D/SSJ492Q.Seq.d/                        291   3e-78
SSG393 (SSG393Q) /CSM/SS/SSG3-D/SSG393Q.Seq.d/                        291   3e-78
SSF463 (SSF463Q) /CSM/SS/SSF4-C/SSF463Q.Seq.d/                        291   3e-78
SSC495 (SSC495Q) /CSM/SS/SSC4-D/SSC495Q.Seq.d/                        291   3e-78
FC-AB19 (FC-AB19Q) /CSM/FC/FC-AB/FC-AB19Q.Seq.d/                      291   3e-78
SSD109 (SSD109Q) /CSM/SS/SSD1-A/SSD109Q.Seq.d/                        278   4e-74
SSA857 (SSA857Q) /CSM/SS/SSA8-C/SSA857Q.Seq.d/                        266   2e-70
VSB222 (VSB222Q) /CSM/VS/VSB2-A/VSB222Q.Seq.d/                        208   3e-53
SSM666 (SSM666Q) /CSM/SS/SSM6-C/SSM666Q.Seq.d/                        208   3e-53

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   208  1e-78  3
AC146157|AC146157.1 Pan troglodytes chromosome UNK clone RP43-2A11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    52  0.16  5
AC024666|AC024666.2 Homo sapiens chromosome 3 clone RP11-698E5 map 3, WORKING DRAFT SEQUENCE, 15 unordered pieces.    46  0.23  1
AP005457|AP005457.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.33  3
AZ953443|AZ953443.1 2M0218N07R Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0218N07 R, DNA sequence.    32  0.39  3
AC074003|AC074003.3 Homo sapiens chromosome 2 clone RP11-163G14, *** SEQUENCING IN PROGRESS ***, 53 unordered pieces.    40  0.64  3
AC016808|AC016808.4 Homo sapiens clone RP11-11G12, WORKING DRAFT SEQUENCE, 17 unordered pieces.    40  0.71  6
AP001653|AP001653.2 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-831H17, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  0.73  4
AL354732|AL354732.30 Human DNA sequence from clone RP11-576I22 on chromosome 1.    42  0.82  2
AC135550|AC135550.2 Pan troglodytes clone RP43-65H8, WORKING DRAFT SEQUENCE, 4 ordered pieces.    44  0.89  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 178,033,358

 psg: 0.53  gvh: 0.41  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSL229 is mit

>SSL229Z.Seq
----------TTTTTTCTCTTTTCTTTTTTTTTTTTTTTTATAAAAAAAAAAATTATATA
TCAAATTTATTTTATATAATTTCAACTTTCACTTTTTATCCTTTTTCAAAAACAACAAAA
AAAAAAACCAACAACAACACAACAACTCAAATACATAGACAAGCCTCAAATACAAGTTGT
TTAATATATAAAATCTTAATTTGCATTATTGTTCAATAGCTATAAATATCAATTTTTTTG
TGTATAAATTTATCAAAAAAAAAAAAAAAAAAAAAAAAATTTAAT