SSL227
Library SS
(Link to library)
Clone ID SSL227
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13274-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SSL227 (SSL227Q) /CSM/SS/SSL2-B/SSL227Q.Seq.d/
GAATAAATTCTTAAATTTAAAGCCATGGTCTCTAGAAATAAAATCATTAAACATTGTTCC
AAAAGAAAAATATCAAAAATATTATGCCAATACAAAAAAACAAAATTTAAATATTATAAT
AATTATAAATTTATAATTGAATTAAAAGATGATCTAAAAAATCAAGAAATTATGAAAAAT
CAAGAGGTTTTAGAAAATGAATATACAAATTTTAAACTCTATGAAATAGAAGATACACAA
AGTGAATTATTGCGTAATTTTTATGAAGCAAATCCAGAATTTCTAAATTATGGTTAAAAA
AAAAAAAXXXXXXXXXX
sequence update 1999. 1.17
Translated Amino Acid sequence
e*ILKFKAMVSRNKIIKHCSKRKISKILCQYKKTKFKYYNNYKFIIELKDDLKNQEIMKN
QEVLENEYTNFKLYEIEDTQSELLRNFYEANPEFLNYG*kkk---


Translated Amino Acid sequence (All Frames)
Frame A:
e*ILKFKAMVSRNKIIKHCSKRKISKILCQYKKTKFKYYNNYKFIIELKDDLKNQEIMKN
QEVLENEYTNFKLYEIEDTQSELLRNFYEANPEFLNYG*kkk---


Frame B:
nkflnlkpwsleikslnivpkekyqkyyantkkqnlniiiiinl*ln*kmi*kikkl*ki
krf*kmniqilnsmk*kihkvnycvifmkqiqnf*imvkkk---


Frame C:
ins*i*shgl*k*nh*tlfqkkniknimpiqknki*il**l*iyn*ikr*skksrnyeks
rgfrk*iykf*tl*nrrytk*iia*fl*sksrisklwlkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL227 (SSL227Q) /CSM/SS/SSL2-B/SSL227Q.Seq.d/ 268 5e-71
SHG472 (SHG472Q) /CSM/SH/SHG4-C/SHG472Q.Seq.d/ 268 5e-71
SSB388 (SSB388Q) /CSM/SS/SSB3-D/SSB388Q.Seq.d/ 258 4e-68
SSE512 (SSE512Q) /CSM/SS/SSE5-A/SSE512Q.Seq.d/ 256 2e-67
SSC747 (SSC747Q) /CSM/SS/SSC7-B/SSC747Q.Seq.d/ 216 2e-55
SSL664 (SSL664Q) /CSM/SS/SSL6-C/SSL664Q.Seq.d/ 196 1e-49
SSF150 (SSF150Q) /CSM/SS/SSF1-C/SSF150Q.Seq.d/ 196 1e-49
SSE855 (SSE855Q) /CSM/SS/SSE8-C/SSE855Q.Seq.d/ 196 1e-49
SHH146 (SHH146Q) /CSM/SH/SHH1-B/SHH146Q.Seq.d/ 196 1e-49
AHQ561 (AHQ561Q) /CSM/AH/AHQ5-C/AHQ561Q.Seq.d/ 196 1e-49

own update 2002.12.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG735357|BG735357.1 cC-esflcLEL6C13a1 Tomato flower library from a mixture of developmental stages Lycopersicon esculentum cDNA, mRNA sequence. 34 0.79 2
BQ515661|BQ515661.1 EST623076 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIT36 3' end, mRNA sequence. 34 0.85 2
BI433286|BI433286.1 EST536047 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC69 5' sequence, mRNA sequence. 34 0.87 2
BQ515660|BQ515660.1 EST623075 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIT36 5' end, mRNA sequence. 34 0.87 2
BG602403|BG602403.1 EST501493 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDH74, mRNA sequence. 38 0.96 2
AC094442|AC094442.5 Rattus norvegicus clone CH230-4F5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 44 1.0 1
AC114665|AC114665.2 Mus musculus clone RP24-173A7, WORKING DRAFT SEQUENCE, 27 ordered pieces. 44 1.0 1
AC116227|AC116227.5 Rattus norvegicus clone CH230-215L16, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 44 1.0 1
AC094472|AC094472.6 Rattus norvegicus clone CH230-4E9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 44 1.0 1
BH266673|BH266673.1 CH230-66I13.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-66I13, DNA sequence. 44 1.0 1
dna update 2003. 8.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008971_1146(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 35 0.81
AE014187_632(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.1
AE001362_41(AE001362|pid:none) Plasmodium falciparum 3D7 chromos... 33 3.1
(Q72SG6) RecName: Full=ATP-dependent Clp protease proteolytic su... 32 5.3
CP000419_654(CP000419|pid:none) Streptococcus thermophilus LMD-9... 32 6.9
CP000024_733(CP000024|pid:none) Streptococcus thermophilus CNRZ1... 32 6.9
CP001184_141(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 32 6.9
CP000023_720(CP000023|pid:none) Streptococcus thermophilus LMG 1... 32 6.9
FJ406989_1(FJ406989|pid:none) Plasmodium falciparum isolate RO33... 32 6.9

protein update 2009. 6.15
PSORT

psg: 0.58 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.05
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
20.0 %: mitochondrial
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SSL227 is nuc

5' end seq. ID SSL227F
5' end seq.
>SSL227F.Seq
GAATAAATTCTTAAATTTAAAGCCATGGTCTCTAGAAATAAAATCATTAAACATTGTTCC
AAAAGAAAAATATCAAAAATATTATGCCAATACAAAAAAACAAAATTTAAATATTATAAT
AATTATAAATTTATAATTGAATTAAAAGATGATCTAAAAAATCAAGAAATTATGAAAAAT
CAAGAGGTTTTAGAAAATGAATATACAAATTTTAAACTCTATGAAATAGAAGATACACAA
AGTGAATTATTGCGTAATTTTTATGAAGCAAATCCAGAATTTCTAAATTATGGTTAAAAA
AAAAAAA
Length of 5' end seq. 307
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -