>SSL224 (SSL224Q) /CSM/SS/SSL2-A/SSL224Q.Seq.d/
GAATTACCAAGTGAGTTTTCAAAATTACCAAAACTTAAACTTTTAAATATCACTGGTAAT
AAATTATCTTTTATTCCACCAGATTATGGACAATTAACAAAGATTGAAAAAATAGATTTC
TCTAAAAATCCTGATATTCATAAATCATTGGATCAACATGCTATTAGAGGTCCTGAAGTT
TTAATTAAATATTTAAAATCTGATGAATATCAATCAATTTATTATAGTGAAACTAAAAAA
CCAAGACCTTCTGGTTTAACTTCTTCAACTGAAAATACAACAATTCCACAAAATACAACT
ACAACAACAACAACTACTTCAAAACCAGAAGAAGAAGAATCATCTGTTCCATATCATTAA
AAATCTTTAXXXXXXXXXX

ELPSEFSKLPKLKLLNITGNKLSFIPPDYGQLTKIEKIDFSKNPDIHKSLDQHAIRGPEV
LIKYLKSDEYQSIYYSETKKPRPSGLTSSTENTTIPQNTTTTTTTTSKPEEEESSVPYH*
ks---

Frame A:
ELPSEFSKLPKLKLLNITGNKLSFIPPDYGQLTKIEKIDFSKNPDIHKSLDQHAIRGPEV
LIKYLKSDEYQSIYYSETKKPRPSGLTSSTENTTIPQNTTTTTTTTSKPEEEESSVPYH*
ks---


Frame B:
nyqvsfqnyqnlnf*islvinyllfhqimdn*qrlkk*islkilifinhwinmllevlkf
*lni*nlmninqfiivklknqdllv*llqlkiqqfhkiqlqqqqllqnqkkknhlfhiik
nl---


Frame C:
itk*vfkitkt*tfkyhw**iifystrlwtinkd*knrfl*ks*ys*iigstcy*rs*sf
n*ifki**isinll**n*ktktfwfnffn*kynnstkynynnnnyfktrrrriicsislk
if---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL224 (SSL224Q) /CSM/SS/SSL2-A/SSL224Q.Seq.d/                        509   e-144
SSJ171 (SSJ171Q) /CSM/SS/SSJ1-C/SSJ171Q.Seq.d/                        434   e-121
SSH339 (SSH339Q) /CSM/SS/SSH3-B/SSH339Q.Seq.d/                        349   2e-95
AFH452 (AFH452Q) /CSM/AF/AFH4-C/AFH452Q.Seq.d/                         40   0.023
VSB350 (VSB350Q) /CSM/VS/VSB3-C/VSB350Q.Seq.d/                         38   0.093
VSB206 (VSB206Q) /CSM/VS/VSB2-A/VSB206Q.Seq.d/                         38   0.093
SSF360 (SSF360Q) /CSM/SS/SSF3-C/SSF360Q.Seq.d/                         38   0.093
FC-BS09 (FC-BS09Q) /CSM/FC/FC-BS/FC-BS09Q.Seq.d/                       38   0.093
CHM281 (CHM281Q) /CSM/CH/CHM2-D/CHM281Q.Seq.d/                         38   0.093
CHE425 (CHE425Q) /CSM/CH/CHE4-B/CHE425Q.Seq.d/                         38   0.093

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34  0.002  12
AP001118|AP001118.1 Buchnera sp. APS genomic DNA, complete sequence, segment 1/2.    36  0.019  9
AC101964|AC101964.3 Mus musculus clone RP24-226D23, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  0.19  5
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.    36  0.24  10
BG225458|BG225458.1 kp68b07.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:C07A9.3 CE20487 PUTATIVE SERINE/THREONINE-PROTEIN KINASE C07A9.3 IN CHROMOSOME III ;, mRNA sequence.    46  0.31  1
BH523732|BH523732.1 BOGMG03TF BOGM Brassica oleracea genomic clone BOGMG03, DNA sequence.    46  0.31  1
AX713881|AX713881.1 Sequence 565 from Patent EP1293569.           30  0.38  3
AK055776|AK055776.1 Homo sapiens cDNA FLJ31214 fis, clone KIDNE2004034.    30  0.38  3
CB745001|CB745001.1 AMGNNUC:NRPI4-00056-D8-A W Rat pituitary (10472) Rattus norvegicus cDNA clone nrpi4-00056-d8 5', mRNA sequence.    40  0.41  2
AC136841|AC136841.9 Medicago truncatula clone mth2-14n9, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  0.47  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001037_5526(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    48   1e-04
AL596272_4(AL596272|pid:none) Leishmania major Friedlin cosmid L...    45   8e-04
CP000099_2371(CP000099|pid:none) Methanosarcina barkeri str. Fus...    45   0.001
AY118581_1(AY118581|pid:none) Drosophila melanogaster LD43891 fu...    44   0.002
CP000348_776(CP000348|pid:none) Leptospira borgpetersenii serova...    44   0.002
CP000350_1963(CP000350|pid:none) Leptospira borgpetersenii serov...    44   0.002
AE014134_2467(AE014134|pid:none) Drosophila melanogaster chromos...    44   0.002
CP000099_3228(CP000099|pid:none) Methanosarcina barkeri str. Fus...    44   0.002
(P08678) RecName: Full=Adenylate cyclase;          EC=4.6.1.1; A...    43   0.003
(Q5FVI3) RecName: Full=Leucine-rich repeat-containing protein 57...    43   0.003

 psg: 0.76  gvh: 0.25  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSL224 is cyt

>SSL224F.Seq
GAATTACCAAGTGAGTTTTCAAAATTACCAAAACTTAAACTTTTAAATATCACTGGTAAT
AAATTATCTTTTATTCCACCAGATTATGGACAATTAACAAAGATTGAAAAAATAGATTTC
TCTAAAAATCCTGATATTCATAAATCATTGGATCAACATGCTATTAGAGGTCCTGAAGTT
TTAATTAAATATTTAAAATCTGATGAATATCAATCAATTTATTATAGTGAAACTAAAAAA
CCAAGACCTTCTGGTTTAACTTCTTCAACTGAAAATACAACAATTCCACAAAATACAACT
ACAACAACAACAACTACTTCAAAACCAGAAGAAGAAGAATCATCTGTTCCATATCATTAA
AAATCTTTA----------