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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL209
Library SS
(Link to library)
Clone ID SSL209
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15517-1
Original site URL
Representative seq. ID SSL209P
(Link to Original site)
Representative DNA sequence 
>SSL209 (SSL209Q) /CSM/SS/SSL2-A/SSL209Q.Seq.d/
ACTAGTTCTAGATCGCGAGCGGCCCCTTTTTTTTTTTTTTTTTTTTTGATTAAAATAAAA
TAAAATAAAGAATAATAAAATAAAATAAAAATAAAATAAAATAAATAAAATAAATAAAAC
ACTACTATAAAATAATTATAATAATCAATTATAGTTATATTTATAGTAGTTGTAATAGGG
AATAGAATAGTTAAATATGTTGGTTGAATCATTTCTTAGGTTAAAACTTAAGAGTAGTAG
TGGTAGTGGTAGCGGTAACAGTGATGATGATATTAATGGATACAATATAAATTTATATTA
TATTTTAGGAATTATAGATGGATTACTATTCTTATGGXXXXXXXXXXAATATTTGGATAC
CAAGAGTAGTGGTATTCACAACGATAATGGTTTTAGCTTTGGTTGGTTGGATTGTAACCT
TAACAATATGGGGTAAAACTGAAGATAGAAGATTATTATTAGATCAAATCATTGAAGGTA
TAATTAGTGGATTGTTTTTAGTTGCAGGATTTGGTTTCTTAATTTATGGTATCTTATTAT
TTGTATCATTTAAAAAATTAGATAAACATAATAAAATTATAAATAGTAATAATATTAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATA
ATAATAATAATAATAATAAAAAATTATAACAATAAATAGTAACAATAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence 
lvldrerplffffff*lk*nkiknnkik*k*nkinkinktll*nnynnql*lyl**l**g
ie*LNMLVESFLRLKLKSSSGSGSGNSDDDINGYNINLYYILGIIDGLLFLW---

---NIWIPRVVVFTTIMVLALVGWIVTLTIWGKTEDRRLLLDQIIEGIISGLFLVAGFGF
LIYGILLFVSFKKLDKHNKIINSNNINNNNNNNNNNNNNNKNNNNNNNNNNNNKKL*q*i
vtik
Translated Amino Acid sequence (All Frames) 
Frame A:
tssrsraapfffffflikik*nke**nkikik*nk*nk*nttik*l**siivifivvvig
nrivkyvg*iis*vkt*e**w*w*r*q***y*wiqykfilyfrnyrwitilm---

---NIWIPRVVVFTTIMVLALVGWIVTLTIWGKTEDRRLLLDQIIEGIISGLFLVAGFGF
LIYGILLFVSFKKLDKHNKIINSNNINNNNNNNNNNNNNNKNNNNNNNNNNNNKKL*q*i
vtik

Frame B:
lvldrerplffffff*lk*nkiknnkik*k*nkinkinktll*nnynnql*lyl**l**g
ie*LNMLVESFLRLKLKSSSGSGSGNSDDDINGYNINLYYILGIIDGLLFLW---

---ifgyqe*wysqr*wf*lwlvgl*p*qygvklkiedyy*ikslkv*lvdcf*lqdlvs
*fmvsyylyhlkn*iniikl*iviiliiiiiiiiiiiiiikiiiiiiiiiiiiknynnk*
*q*k

Frame C:
*f*iasgpfffffffd*nkik*riik*nknkik*ik*ikhyykiiiiinysyiysscnre
*ns*icwlnhflg*nlrvvvvvvavtvmmilmdti*iyiif*el*mdyysy---

---yldtkssgihndngfsfgwldcnlnnmg*n*r*kiiirsnh*ryn*wivfscriwfl
nlwyliicii*kir*t**nyk***y***************k************kiitins
nnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL209 (SSL209Q) /CSM/SS/SSL2-A/SSL209Q.Seq.d/                        817   0.0
SSH494 (SSH494Q) /CSM/SS/SSH4-D/SSH494Q.Seq.d/                         50   5e-05
SSM380 (SSM380Q) /CSM/SS/SSM3-D/SSM380Q.Seq.d/                         48   2e-04
SSM332 (SSM332Q) /CSM/SS/SSM3-B/SSM332Q.Seq.d/                         48   2e-04
SSL895 (SSL895Q) /CSM/SS/SSL8-D/SSL895Q.Seq.d/                         48   2e-04
SSK277 (SSK277Q) /CSM/SS/SSK2-D/SSK277Q.Seq.d/                         48   2e-04
SSH125 (SSH125Q) /CSM/SS/SSH1-B/SSH125Q.Seq.d/                         48   2e-04
SSE156 (SSE156Q) /CSM/SS/SSE1-C/SSE156Q.Seq.d/                         48   2e-04
SSC822 (SSC822Q) /CSM/SS/SSC8-A/SSC822Q.Seq.d/                         48   2e-04
SSC426 (SSC426Q) /CSM/SS/SSC4-B/SSC426Q.Seq.d/                         48   2e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   424  0.0  6
BX404862|BX404862.1 human full-length cDNA 5-PRIME end of clone CS0CAP004YH07 of THYMUS  of Homo sapiens (human).    48  2e-04  3
BI731383|BI731383.1 603353837F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:5361128 5', mRNA sequence.    48  0.001  2
BF788870|BF788870.1 602110584F2 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE:4238660 5', mRNA sequence.    48  0.002  2
BM651585|BM651585.1 17000687374082 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449629442 5', mRNA sequence.    48  0.003  2
BQ257015|BQ257015.1 NISC_ko09b08.q3 Baker mouse embryo e6.5 Mus musculus cDNA clone IMAGE:5407814, mRNA sequence.    48  0.003  2
BU906088|BU906088.1 AGENCOURT_10454907 NICHD XGC Emb1 Xenopus laevis cDNA clone IMAGE:6631040 5', mRNA sequence.    50  0.004  2
BX415144|BX415144.1 human full-length cDNA 5-PRIME end of clone CS0CAP004YH07 of THYMUS  of Homo sapiens (human).    48  0.004  2
BM579552|BM579552.1 17000687238853 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449682432 5', mRNA sequence.    48  0.004  2
BX447341|BX447341.1 human full-length cDNA 5-PRIME end of clone CS0CAP004YH07 of THYMUS  of Homo sapiens (human).    48  0.005  2
dna update 2003. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_23(AC116963|pid:none) Dictyostelium discoideum chromoso...   149   6e-35
CP000110_2562(CP000110|pid:none) Synechococcus sp. CC9605, compl...    34   3.8
CU207366_2210(CU207366|pid:none) Gramella forsetii KT0803 comple...    33   6.5
EU254537_1(EU254537|pid:none) Plasmodium sp. br67 cytochrome b (...    33   6.5
AY099047_1(AY099047|pid:none) Plasmodium sp. from Ameiva ameiva ...    33   6.5
CP001280_47(CP001280|pid:none) Methylocella silvestris BL2, comp...    33   8.5
protein update 2009. 2. 3
PSORT 

 psg: 0.66  gvh: 0.50  alm: 0.18  top: 0.67  tms: 0.20  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSL209 is pla
5' end seq. ID SSL209F
5' end seq. 
>SSL209F.Seq
ACTAGTTCTAGATCGCGAGCGGCCCCTTTTTTTTTTTTTTTTTTTTTGATTAAAATAAAA
TAAAATAAAGAATAATAAAATAAAATAAAAATAAAATAAAATAAATAAAATAAATAAAAC
ACTACTATAAAATAATTATAATAATCAATTATAGTTATATTTATAGTAGTTGTAATAGGG
AATAGAATAGTTAAATATGTTGGTTGAATCATTTCTTAGGTTAAAACTTAAGAGTAGTAG
TGGTAGTGGTAGCGGTAACAGTGATGATGATATTAATGGATACAATATAAATTTATATTA
TATTTTAGGAATTATAGATGGATTACTATTCTTATGG----------
Length of 5' end seq. 337
3' end seq. ID SSL209Z
3' end seq. 
>SSL209Z.Seq
----------AATATTTGGATACCAAGAGTAGTGGTATTCACAACGATAATGGTTTTAGC
TTTGGTTGGTTGGATTGTAACCTTAACAATATGGGGTAAAACTGAAGATAGAAGATTATT
ATTAGATCAAATCATTGAAGGTATAATTAGTGGATTGTTTTTAGTTGCAGGATTTGGTTT
CTTAATTTATGGTATCTTATTATTTGTATCATTTAAAAAATTAGATAAACATAATAAAAT
TATAAATAGTAATAATATTAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAAAAATAATAATAATAATAATAATAATAATAATAATAATAAAAAATTATAACAATAAAT
AGTAACAATAAAAA
Length of 3' end seq. 364
Connected seq. ID SSL209P
Connected seq. 
>SSL209P.Seq
ACTAGTTCTAGATCGCGAGCGGCCCCTTTTTTTTTTTTTTTTTTTTTGATTAAAATAAAA
TAAAATAAAGAATAATAAAATAAAATAAAAATAAAATAAAATAAATAAAATAAATAAAAC
ACTACTATAAAATAATTATAATAATCAATTATAGTTATATTTATAGTAGTTGTAATAGGG
AATAGAATAGTTAAATATGTTGGTTGAATCATTTCTTAGGTTAAAACTTAAGAGTAGTAG
TGGTAGTGGTAGCGGTAACAGTGATGATGATATTAATGGATACAATATAAATTTATATTA
TATTTTAGGAATTATAGATGGATTACTATTCTTATGG----------AATATTTGGATAC
CAAGAGTAGTGGTATTCACAACGATAATGGTTTTAGCTTTGGTTGGTTGGATTGTAACCT
TAACAATATGGGGTAAAACTGAAGATAGAAGATTATTATTAGATCAAATCATTGAAGGTA
TAATTAGTGGATTGTTTTTAGTTGCAGGATTTGGTTTCTTAATTTATGGTATCTTATTAT
TTGTATCATTTAAAAAATTAGATAAACATAATAAAATTATAAATAGTAATAATATTAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATA
ATAATAATAATAATAATAAAAAATTATAACAATAAATAGTAACAATAAAAA
Length of connected seq. 701
Full length Seq ID -
Full length Seq. -
Length of full length seq. -