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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL721
Library AF
(Link to library)
Clone ID AFL721
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFL721 (AFL721Q) /CSM/AF/AFL7-A/AFL721Q.Seq.d/
XXXXXXXXXXTNANNNNANTNGTNNNNTNNGTAANNANTNTATNNNNNATNCNTTGNNNA
TNNNNANNAATNATGGTAGTNAANTNACTNTNCATGGTNTTNANCAATNNTANGTNNCAA
TCANTGAAGANCNAAAGAATAAAAAACTCATTGAACTNTTGGATTCATTAGACTTTAATC
AAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAG
ATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAAC
AATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTC
GTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATCTGCC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---XXXXXXXXXXXXXXLXXXXNXGSXXTXHGXXQXXVXIXEXXKNKKLIELLDSLDFNQ
AVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGR
GIDIERVNVVINYDMAESA
Translated Amino Acid sequence (All Frames) 
Frame A:
---XXXXXXXXXXXXXXLXXXXNXGSXXTXHGXXQXXVXIXEXXKNKKLIELLDSLDFNQ
AVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGR
GIDIERVNVVINYDMAESA


Frame B:
---xxxvxxvxxxxxxxxxxxxxmvvxxlxmvxxnxxxqsxkxxriknslnxwih*tlik
plfssnlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlplislvv
vsilnvsmsssttiwlnl


Frame C:
---xxxxxx*xxyxxxxxxxxxxw*xxxxxwxxxxxxxnx*rxke*kth*txgfirl*ss
ryfrqic*tc*clk*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylwsw
yry*tcqcrhqlryg*ic
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL686 (VFL686Q) /CSM/VF/VFL6-D/VFL686Q.Seq.d/                        589   e-167
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                        589   e-167
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/                        589   e-167
SSJ233 (SSJ233Q) /CSM/SS/SSJ2-B/SSJ233Q.Seq.d/                        589   e-167
SLH648 (SLH648Q) /CSM/SL/SLH6-B/SLH648Q.Seq.d/                        589   e-167
SLE767 (SLE767Q) /CSM/SL/SLE7-C/SLE767Q.Seq.d/                        589   e-167
SFL133 (SFL133Q) /CSM/SF/SFL1-B/SFL133Q.Seq.d/                        589   e-167
SFL121 (SFL121Q) /CSM/SF/SFL1-A/SFL121Q.Seq.d/                        589   e-167
SFE227 (SFE227Q) /CSM/SF/SFE2-B/SFE227Q.Seq.d/                        589   e-167
SFD888 (SFD888Q) /CSM/SF/SFD8-D/SFD888Q.Seq.d/                        589   e-167
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039569) Dictyostelium discoideum slug cDNA, clone SLE767.      577   e-160  1
(AU039364) Dictyostelium discoideum slug cDNA, clone SLH648.      577   e-160  1
(C23661) Dictyostelium discoideum gamete cDNA, clone FC-AI06.     577   e-160  1
(BJ434760) Dictyostelium discoideum cDNA clone:ddv24k22, 3' ...   577   e-160  1
(BJ431010) Dictyostelium discoideum cDNA clone:ddv9f15, 3' e...   577   e-160  1
(BJ428762) Dictyostelium discoideum cDNA clone:ddv1l03, 3' e...   577   e-160  1
(BJ401431) Dictyostelium discoideum cDNA clone:dds23a09, 3' ...   577   e-160  1
(BJ401395) Dictyostelium discoideum cDNA clone:dds23i05, 3' ...   577   e-160  1
(BJ400220) Dictyostelium discoideum cDNA clone:dds9e08, 3' e...   577   e-160  1
(BJ400147) Dictyostelium discoideum cDNA clone:dds8p22, 3' e...   577   e-160  1
dna update 2009. 4. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940352_341(CR940352|pid:none) Theileria annulata strain Ankara...   132   4e-30
AE001362_93(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...   132   4e-30
(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   131   8e-30
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   131   8e-30
EZ000052_1(EZ000052|pid:none) TSA: Schistosoma japonicum SJCHGC0...   128   5e-29
AY223417_1(AY223417|pid:none) Schistosoma japonicum clone ZZZ368...   128   5e-29
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   127   9e-29
AK221273_1(AK221273|pid:none) Arabidopsis thaliana mRNA for DEAD...   126   2e-28
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   126   2e-28
AL360314_6(AL360314|pid:none) Arabidopsis thaliana DNA chromosom...   126   2e-28
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL721 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFL721Z
3' end seq. 
>AFL721Z.Seq
XXXXXXXXXXTNANNNNANTNGTNNNNTNNGTAANNANTNTATNNNNNATNCNTTGNNNA
TNNNNANNAATNATGGTAGTNAANTNACTNTNCATGGTNTTNANCAATNNTANGTNNCAA
TCANTGAAGANCNAAAGAATAAAAAACTCATTGAACTNTTGGATTCATTAGACTTTAATC
AAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAG
ATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAAC
AATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTC
GTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATCTGCC
Length of 3' end seq. 419
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -