SSL161
Library SS
(Link to library)
Clone ID SSL161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16483-1
Original site URL
Representative seq. ID SSL161Z
(Link to Original site)
Representative DNA sequence
>SSL161 (SSL161Q) /CSM/SS/SSL1-C/SSL161Q.Seq.d/
XXXXXXXXXXTGATGAATCACTATATAAATTTGCACCATCATATACGGTAGTTGTAAAAG
TGATCTTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGACTATTACCAAAGCCAGA
TAAACCATTCAATTTCGATTCTGAATTGAATAATTTCTATATTGTAGATTCAAAAGAAAC
CAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCAGAGAAACTAAACTCAAT
TGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGATTGGTTGGAATATAAGGT
TACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGATTCAAATAAAACCGTCTC
CATAGATTATATGTTTATTAGTTTACCTGATCCAAAATTATGTCCAAAGGAATTAATTGC
TGTTAGATGTGCCAATGGTACAATTCCAACCTATACTATCGCTGCAACTCGTTGTTTATC
ATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTGG
ATACACTTTAAAATCATATGCGTCAAAACCAAATGGTTGTCCACGTTATTATTGCATCCC
ATCATTTTTATCTTAATTTATTATTCCACAATCAAAATTCAAAAAATTAATTAAAAAAAA
AAAATAAATGATTAAAAACCCAAAAAATACTGGTTTTTCA
sequence update 1998. 3. 6
Translated Amino Acid sequence
---*iti*ICTIIYGSCKSDLKKDEIIVSKIFRLLPKPDKPFNFDSELNNFYIVDSKETN
SNIEIKKLNSNKSEKLNSIENSYSQDVSFVPMDWLEYKVTTGESVFTVSGRIDSNKTVSI
DYMFISLPDPKLCPKELIAVRCANGTIPTYTIAATRCLSFSGCVHRGICPLVVPGCSGGY
TLKSYASKPNGCPRYYCIPSFLS*fiipqskfkklikkkk*miknpkntgfs


Translated Amino Acid sequence (All Frames)
Frame A:
---deslykfapsytvvvkvilkkmrl*yqksldyyqsqinhsisiln*iisil*iqkkp
iqilklrn*ivtnqrn*tqlkivthkmyrlfqwigwnirlplvnlcsqlvee*iqikpsp
*iicllvyliqnyvqrn*llldvpmvqfqpilslqlvvyhsvvvyieefvhwlfqvvlvd
tl*nhmrqnqmvvhviiashhfylnllfhnqnskn*lkkknk*lktqkilvf


Frame B:
---mnhyinlhhhir*l*k*s*kr*dysiknl*titkar*tiqfrf*ie*flycrfkrnq
fky*n*eik**qiretkln*k*lltrcivcsnglvgi*gyhw*icvhs*wknrfk*nrlh
rlyvy*ft*skimskgincc*mcqwynsnlyyrcnslfiiqwlct*rnlsigcsrlfwwi
hfkiicvktkwlstlllhpiifiliyystikiqkin*kkkind*kpkkywff


Frame C:
---*iti*ICTIIYGSCKSDLKKDEIIVSKIFRLLPKPDKPFNFDSELNNFYIVDSKETN
SNIEIKKLNSNKSEKLNSIENSYSQDVSFVPMDWLEYKVTTGESVFTVSGRIDSNKTVSI
DYMFISLPDPKLCPKELIAVRCANGTIPTYTIAATRCLSFSGCVHRGICPLVVPGCSGGY
TLKSYASKPNGCPRYYCIPSFLS*fiipqskfkklikkkk*miknpkntgfs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL161 (SSL161Q) /CSM/SS/SSL1-C/SSL161Q.Seq.d/ 1249 0.0
SSJ364 (SSJ364Q) /CSM/SS/SSJ3-C/SSJ364Q.Seq.d/ 1227 0.0
SSI216 (SSI216Q) /CSM/SS/SSI2-A/SSI216Q.Seq.d/ 1227 0.0
SSF374 (SSF374Q) /CSM/SS/SSF3-D/SSF374Q.Seq.d/ 1227 0.0
SSA302 (SSA302Q) /CSM/SS/SSA3-A/SSA302Q.Seq.d/ 1213 0.0
SSD388 (SSD388Q) /CSM/SS/SSD3-D/SSD388Q.Seq.d/ 1187 0.0
SSM142 (SSM142Q) /CSM/SS/SSM1-B/SSM142Q.Seq.d/ 1176 0.0
CHM132 (CHM132Q) /CSM/CH/CHM1-B/CHM132Q.Seq.d/ 1154 0.0
SSH142 (SSH142Q) /CSM/SS/SSH1-B/SSH142Q.Seq.d/ 1142 0.0
SSD122 (SSD122Q) /CSM/SS/SSD1-A/SSD122Q.Seq.d/ 1134 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence. 1144 0.0 3
AP000870|AP000870.5 Homo sapiens genomic DNA, chromosome 11 clone:RP11-697H10, complete sequence. 42 0.12 3
BH152199|BH152199.1 ENTPU08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 34 0.96 3
BC043774|BC043774.1 Xenopus laevis, Similar to general transcription factor II E, polypeptide 1 (alpha subunit, 56kDa), clone MGC:52978 IMAGE:4930700, mRNA, complete cds. 36 2.0 2
AC123610|AC123610.3 Mus musculus clone RP23-343M15, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 2.3 1
AP004858|AP004858.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08, WORKING DRAFT SEQUENCE, 1 ordered pieces. 44 2.3 1
AC079265|AC079265.3 Mus musculus chromosome 2 clone RP23-241O13, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces. 44 2.3 1
AP005055|AP005055.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08, WORKING DRAFT SEQUENCE, 1 ordered pieces. 44 2.3 1
AC129689|AC129689.4 Rattus norvegicus clone CH230-117H18, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 2.3 1
AC096366|AC096366.7 Rattus norvegicus clone CH230-12I1, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 2.3 1
dna update 2003. 8. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom... 339 9e-97
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos... 82 1e-14
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos... 75 3e-12
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos... 60 8e-08
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele... 35 1.7
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ... 35 1.7
AE014188_321(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 34 4.9
EF083471_1(EF083471|pid:none) Picea sitchensis clone WS02716_L14... 34 4.9
AB070946_6(AB070946|pid:none) Streptomyces avermitilis polyketid... 33 6.4
CP000656_6(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, comp... 33 8.4
protein update 2009. 6.14
PSORT

psg: 0.36 gvh: 0.24 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSL161 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL161Z
3' end seq.
>SSL161Z.Seq
----------TGATGAATCACTATATAAATTTGCACCATCATATACGGTAGTTGTAAAAG
TGATCTTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGACTATTACCAAAGCCAGA
TAAACCATTCAATTTCGATTCTGAATTGAATAATTTCTATATTGTAGATTCAAAAGAAAC
CAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCAGAGAAACTAAACTCAAT
TGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGATTGGTTGGAATATAAGGT
TACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGATTCAAATAAAACCGTCTC
CATAGATTATATGTTTATTAGTTTACCTGATCCAAAATTATGTCCAAAGGAATTAATTGC
TGTTAGATGTGCCAATGGTACAATTCCAACCTATACTATCGCTGCAACTCGTTGTTTATC
ATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTGG
ATACACTTTAAAATCATATGCGTCAAAACCAAATGGTTGTCCACGTTATTATTGCATCCC
ATCATTTTTATCTTAATTTATTATTCCACAATCAAAATTCAAAAAATTAATTAAAAAAAA
AAAATAAATGATTAAAAACCCAAAAAATACTGGTTTTTCA
Length of 3' end seq. 690
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -