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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL156
Library SS
(Link to library)
Clone ID SSL156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13859-1
Original site URL
Representative seq. ID SSL156E
(Link to Original site)
Representative DNA sequence 
>SSL156 (SSL156Q) /CSM/SS/SSL1-C/SSL156Q.Seq.d/
GTAGCGGACAAAAGTTGGTAAACTCACATTGAAAACCACATCAATGGATGCATTATATGA
TTTGGGTGCAAAGATGATCGACTCACTCACCAAAGAGAAGGTTCAAAATGGTGATATCAT
TCGTATAGATAAAGGCACTGGTAAGATCACAAAATTGGGAAGATCGCTAAGTAGAGTAAG
AGATCATGAAATTAGTGGTTCTAAAGTAAACTTTATCGAATGTCCAGAAGGTGAAATTCA
ACAAAGAAGAACCGAGACCCACACTGTATCACTCCACGAGATCGATGTTATCAATAGCAG
AGCACAAGGGTTCTTTGCCTTGTTTGCCGGTGACATTGGTGAGATTAAATCTGAAGTACG
TGAANATCAAAAAGTTGCCGAATGGAAGGAAGAAGGCAAAGCTGAAATCGTACCAGGTGT
TTTATTCATCGACGAAGTACACATGTTGGATATCGAATGTTTTTCATACTTAAATCGTGC
CTTGGAGGACGACATGTCACCAATCTTAATTATAGCCACCAATCGTGGTAATACAACTAT
TCGTGGTACCGATTATAAAGCACCACATGGTATTCCATTAGATCTCTTGGATCGTTTATT
AATTATCAACACTCAACCATACACTGAAAGAAAAAGATATTTACAAAATTTTAAAGATTC
GTTGTGAAGAAGAGGATGTAGATATTCAAGAGGATGCATTACAACTTTTAACTAAAATTG
GTGTTGAAACTTCACTTCGTTATGCAATTCATCTAATCACTTCTTCTTCATTAGTATCTG
TTAAAAGAAAAGGTACTGATGTTTCAGTTGATGATATTAAAAAAGTTTATGACTTATTTG
TTGATGTCAAAAGATCTACAAAATATTTAAAAGATTATCAAGATGAATATTTATATAATT
CTCAACCAGAAACAACAGCAACAAAAACTAATGAAGAACAACAAACAATGCAAACTGCTT
AAAAAAAAAAAAAAAAACAATAATAAATAATTAATTTTAAACAAAACTATATATAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
*RTKVGKLTLKTTSMDALYDLGAKMIDSLTKEKVQNGDIIRIDKGTGKITKLGRSLSRVR
DHEISGSKVNFIECPEGEIQQRRTETHTVSLHEIDVINSRAQGFFALFAGDIGEIKSEVR
EXQKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYLNRALEDDMSPILIIATNRGNTTI
RGTDYKAPHGIPLDLLDRLLIINTQPYTERKRYLQNFKDSL*rrgcrysrgcittfn*nw
c*nftslcnssnhfffisic*kkry*cfs**y*ksl*lic*cqkiykifkrlsr*ifi*f
strnnsnkn**rttnnanclkkkkktiinn*f*tklyik
Translated Amino Acid sequence (All Frames) 
Frame A:
vadksw*thienhingcii*fgckddrlthqregskw*yhsyr*rhw*dhkigkiak*sk
rs*n*wf*sklyrmsrr*nstkknrdphcitprdrcyq*qstrvlclvcr*hw*d*i*st
*xskscrmegrrqs*nrtrcfihrrsthvgyrmffilksclggrhvtnlnyshqsw*yny
swyrl*sttwysirslgsfinyqhstih*kkkiftkf*rfvvkkrm*ifkrmhynf*lkl
vlklhfvmqfi*slllh*yllkekvlmfqlmilkkfmtyllmskdlqni*kiikmniyii
lnqkqqqqklmknnkqckllkkkkknnnk*lilnktiykk


Frame B:
*RTKVGKLTLKTTSMDALYDLGAKMIDSLTKEKVQNGDIIRIDKGTGKITKLGRSLSRVR
DHEISGSKVNFIECPEGEIQQRRTETHTVSLHEIDVINSRAQGFFALFAGDIGEIKSEVR
EXQKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYLNRALEDDMSPILIIATNRGNTTI
RGTDYKAPHGIPLDLLDRLLIINTQPYTERKRYLQNFKDSL*rrgcrysrgcittfn*nw
c*nftslcnssnhfffisic*kkry*cfs**y*ksl*lic*cqkiykifkrlsr*ifi*f
strnnsnkn**rttnnanclkkkkktiinn*f*tklyik


Frame C:
sgqklvnsh*kphqwmhymiwvqr*sthspkrrfkmvisfv*ikalvrsqnwedr*ve*e
imklvvlk*tlsnvqkvkfnkeeprptlyhstrsmlsiaehkgslpclpvtlvrlnlkyv
xikklpngrkkaklksyqvfysstkytcwisnvfht*ivpwrttchqs*l*ppivviqlf
vvpiikhhmvfh*iswivy*lstlnhtlkekdiykilkirceeedvdiqedalqlltkig
vetslryaihlitssslvsvkrkgtdvsvddikkvydlfvdvkrstkylkdyqdeylyns
qpettatktneeqqtmqta*kkkkkq**iinfkqnyi*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL156 (SSL156Q) /CSM/SS/SSL1-C/SSL156Q.Seq.d/                       1897   0.0
VFF618 (VFF618Q) /CSM/VF/VFF6-A/VFF618Q.Seq.d/                       1354   0.0
SFC365 (SFC365Q) /CSM/SF/SFC3-C/SFC365Q.Seq.d/                       1328   0.0
SFD887 (SFD887Q) /CSM/SF/SFD8-D/SFD887Q.Seq.d/                       1320   0.0
AFL591 (AFL591Q) /CSM/AF/AFL5-D/AFL591Q.Seq.d/                       1302   0.0
SFI231 (SFI231Q) /CSM/SF/SFI2-B/SFI231Q.Seq.d/                       1294   0.0
SFG570 (SFG570Q) /CSM/SF/SFG5-C/SFG570Q.Seq.d/                       1291   0.0
CFF183 (CFF183Q) /CSM/CF/CFF1-D/CFF183Q.Seq.d/                       1289   0.0
VFB579 (VFB579Q) /CSM/VF/VFB5-D/VFB579Q.Seq.d/                       1255   0.0
CHC484 (CHC484Q) /CSM/CH/CHC4-D/CHC484Q.Seq.d/                       1152   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU777677|AF218071_1 (AF218071) reptin [Xenopus laevis], mRNA sequence.    68  7e-20  4
Z73591|Z73591.1 S.cerevisiae chromosome XVI reading frame ORF YPL235w.    96  1e-15  1
X94561|X94561.1 S.cerevisiae chromosome XVI left arm (EU) DNA segment.    96  1e-15  1
Z67751|Z67751.1 S.cerevisiae DNA (chromosome XVI; 38 kb).         96  1e-15  1
E37810|E37810.1 DNA helicase.                                     96  1e-15  1
AX594460|AX594460.1 Sequence 114 from Patent EP1258494.           96  1e-15  1
BU772376|AF218071_1 (AF218071) reptin [Xenopus laevis], mRNA sequence.    52  2e-12  4
BU792104|AF218071_1 (AF218071) reptin [Xenopus laevis], mRNA sequence.    68  5e-11  3
AX077224|AX077224.1 Sequence 1 from Patent WO0105975.             80  6e-11  1
CF057556|CF057556.1 QCO33e07.yg QCO Zea mays cDNA clone QCO33e07, mRNA sequence.    80  6e-11  1
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UW5) RecName: Full=RuvB-like helicase 2;          EC=3.6.1.-;     382   e-163
BC123265_1(BC123265|pid:none) Xenopus laevis reptin, mRNA (cDNA ...   300   e-111
BC047966_1(BC047966|pid:none) Xenopus laevis RuvB-like protein 2...   300   e-111
(Q9DE27) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   300   e-111
CR761457_1(CR761457|pid:none) Xenopus tropicalis finished cDNA, ...   300   e-110
FN320211_1(FN320211|pid:none) Schistosoma japonicum isolate Anhu...   297   e-110
AY814660_1(AY814660|pid:none) Schistosoma japonicum SJCHGC06270 ...   297   e-110
BC098042_1(BC098042|pid:none) Rattus norvegicus RuvB-like 2 (E. ...   295   e-109
AK135404_1(AK135404|pid:none) Mus musculus 12 days embryo female...   295   e-109
FN315093_1(FN315093|pid:none) Schistosoma japonicum isolate Anhu...   297   e-109
protein update 2009. 7. 9
PSORT 

 psg: 0.76  gvh: 0.35  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial

>> prediction for SSL156 is cyt
5' end seq. ID SSL156F
5' end seq. 
>SSL156F.Seq
GTAGCGGACAAAAGTTGGTAAACTCACATTGAAAACCACATCAATGGATGCATTATATGA
TTTGGGTGCAAAGATGATCGACTCACTCACCAAAGAGAAGGTTCAAAATGGTGATATCAT
TCGTATAGATAAAGGCACTGGTAAGATCACAAAATTGGGAAGATCGCTAAGTAGAGTAAG
AGATCATGAAATTAGTGGTTCTAAAGTAAACTTTATCGAATGTCCAGAAGGTGAAATTCA
ACAAAGAAGAACCGAGACCCACACTGTATCACTCCACGAGATCGATGTTATCAATAGCAG
AGCACAAGGGTTCTTTGCCTTGTTTGCCGGTGACATTGGTGAGATTAAATCTGAAGTACG
TGAACAAATCAATCAAAAAGTTGCCGAATGGAAGGAAGAAGGCAAAGCTGAAATCGTACC
AGGTGTTTTATTCATCGACGAAGTACACATGTTGGATATCGAATGTTTTTCATACTTAAA
TCGTGCCTTGGAGGACGACATGTCACCAATCTTAATTATAGCCACCAATCGTGGTAATAC
AACTATTCGTGGTACCGATTATAAAGCACCACATGGTATTCCATTAGATCTCTTGGATCG
TTTATTAATTATCAACACTCAACCATACACTGAAA----------
Length of 5' end seq. 635
3' end seq. ID SSL156Z
3' end seq. 
>SSL156Z.Seq
----------CATCAAAAAGTTGCCGAATGGAAGGAAGAAGGCAAAGCTGAAATCGTACC
AGGTGTTTTATTCATCGACGAAGTACACATGTTGGATATCGAATGTTTTTCATACTTAAA
TCGTGCCTTGGAGGACGACATGTCACCAATCTTAATTATAGCCACCAATCGTGGTAATAC
AACTATTCGTGGTACCGATTATAAAGCACCACATGGTATTCCATTAGATCTCTTGGATCG
TTTATTAATTATCAACACTCAACCATACACTGAAAAAGATATTTACAAAATTTTAAAGAT
TCGTTGTGAAGAAGAGGATGTAGATATTCAAGAGGATGCATTACAACTTTTAACTAAAAT
TGGTGTTGAAACTTCACTTCGTTATGCAATTCATCTAATCACTTCTTCTTCATTAGTATC
TGTTAAAAGAAAAGGTACTGATGTTTCAGTTGATGATATTAAAAAAGTTTATGACTTATT
TGTTGATGTCAAAAGATCTACAAAATATTTAAAAGATTATCAAGATGAATATTTATATAA
TTCTCAACCAGAAACAACAGCAACAAAAACTAATGAAGAACAACAAACAATGCAAACTGC
TTAAAAAAAAAAAAAAAAACAATAATAAATAATTAATTTTAAACAAAACTATATATAAAA
AAAAAAAAAAAAA
Length of 3' end seq. 663
Connected seq. ID SSL156P
Connected seq. 
>SSL156P.Seq
GTAGCGGACAAAAGTTGGTAAACTCACATTGAAAACCACATCAATGGATGCATTATATGA
TTTGGGTGCAAAGATGATCGACTCACTCACCAAAGAGAAGGTTCAAAATGGTGATATCAT
TCGTATAGATAAAGGCACTGGTAAGATCACAAAATTGGGAAGATCGCTAAGTAGAGTAAG
AGATCATGAAATTAGTGGTTCTAAAGTAAACTTTATCGAATGTCCAGAAGGTGAAATTCA
ACAAAGAAGAACCGAGACCCACACTGTATCACTCCACGAGATCGATGTTATCAATAGCAG
AGCACAAGGGTTCTTTGCCTTGTTTGCCGGTGACATTGGTGAGATTAAATCTGAAGTACG
TGAACAAATCAATCAAAAAGTTGCCGAATGGAAGGAAGAAGGCAAAGCTGAAATCGTACC
AGGTGTTTTATTCATCGACGAAGTACACATGTTGGATATCGAATGTTTTTCATACTTAAA
TCGTGCCTTGGAGGACGACATGTCACCAATCTTAATTATAGCCACCAATCGTGGTAATAC
AACTATTCGTGGTACCGATTATAAAGCACCACATGGTATTCCATTAGATCTCTTGGATCG
TTTATTAATTATCAACACTCAACCATACACTGAAA----------CATCAAAAAGTTGCC
GAATGGAAGGAAGAAGGCAAAGCTGAAATCGTACCAGGTGTTTTATTCATCGACGAAGTA
CACATGTTGGATATCGAATGTTTTTCATACTTAAATCGTGCCTTGGAGGACGACATGTCA
CCAATCTTAATTATAGCCACCAATCGTGGTAATACAACTATTCGTGGTACCGATTATAAA
GCACCACATGGTATTCCATTAGATCTCTTGGATCGTTTATTAATTATCAACACTCAACCA
TACACTGAAAAAGATATTTACAAAATTTTAAAGATTCGTTGTGAAGAAGAGGATGTAGAT
ATTCAAGAGGATGCATTACAACTTTTAACTAAAATTGGTGTTGAAACTTCACTTCGTTAT
GCAATTCATCTAATCACTTCTTCTTCATTAGTATCTGTTAAAAGAAAAGGTACTGATGTT
TCAGTTGATGATATTAAAAAAGTTTATGACTTATTTGTTGATGTCAAAAGATCTACAAAA
TATTTAAAAGATTATCAAGATGAATATTTATATAATTCTCAACCAGAAACAACAGCAACA
AAAACTAATGAAGAACAACAAACAATGCAAACTGCTTAAAAAAAAAAAAAAAAACAATAA
TAAATAATTAATTTTAAACAAAACTATATATAAAAAAAAAAAAAAAAA
Length of connected seq. 1298
Full length Seq ID SSL156E
Full length Seq. 
>SSL156E.Seq
GTAGCGGACAAAAGTTGGTAAACTCACATTGAAAACCACATCAATGGATGCATTATATGA
TTTGGGTGCAAAGATGATCGACTCACTCACCAAAGAGAAGGTTCAAAATGGTGATATCAT
TCGTATAGATAAAGGCACTGGTAAGATCACAAAATTGGGAAGATCGCTAAGTAGAGTAAG
AGATCATGAAATTAGTGGTTCTAAAGTAAACTTTATCGAATGTCCAGAAGGTGAAATTCA
ACAAAGAAGAACCGAGACCCACACTGTATCACTCCACGAGATCGATGTTATCAATAGCAG
AGCACAAGGGTTCTTTGCCTTGTTTGCCGGTGACATTGGTGAGATTAAATCTGAAGTACG
TGAANATCAAAAAGTTGCCGAATGGAAGGAAGAAGGCAAAGCTGAAATCGTACCAGGTGT
TTTATTCATCGACGAAGTACACATGTTGGATATCGAATGTTTTTCATACTTAAATCGTGC
CTTGGAGGACGACATGTCACCAATCTTAATTATAGCCACCAATCGTGGTAATACAACTAT
TCGTGGTACCGATTATAAAGCACCACATGGTATTCCATTAGATCTCTTGGATCGTTTATT
AATTATCAACACTCAACCATACACTGAAAGAAAAAGATATTTACAAAATTTTAAAGATTC
GTTGTGAAGAAGAGGATGTAGATATTCAAGAGGATGCATTACAACTTTTAACTAAAATTG
GTGTTGAAACTTCACTTCGTTATGCAATTCATCTAATCACTTCTTCTTCATTAGTATCTG
TTAAAAGAAAAGGTACTGATGTTTCAGTTGATGATATTAAAAAAGTTTATGACTTATTTG
TTGATGTCAAAAGATCTACAAAATATTTAAAAGATTATCAAGATGAATATTTATATAATT
CTCAACCAGAAACAACAGCAACAAAAACTAATGAAGAACAACAAACAATGCAAACTGCTT
AAAAAAAAAAAAAAAAACAATAATAAATAATTAATTTTAAACAAAACTATATATAAAAAA
Length of full length seq. 1020