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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL151
Library SS
(Link to library)
Clone ID SSL151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13444-1|Contig-U15977-1
Original site URL
Representative seq. ID SSL151P
(Link to Original site)
Representative DNA sequence 
>SSL151 (SSL151Q) /CSM/SS/SSL1-C/SSL151Q.Seq.d/
GTCTAAATATATAATAAATAAATAAATAAATAAAAATGACTGTATTATTAGAACAAGAAT
ATAAGAACGAAATTGATACTAAAGTATTTAAAGTTTTAGTAGCATTTTCACAAAGTATAG
AAAGATCATTAATAAACAATCAAAATACATTACATCAAGCAGAGAATTCATTAAATATAA
ATATTAATACACAAGCACAAGCTATTGATTCATCACAGTTTGATTCATCGAATTTAGGAT
TATACACTGTTCAATTAGTTAGAAATGTTATAAAAAGATCAAATGATTTATCCGATGAAT
TCAATTCCTTAGTAAATACAATAACACAACAACAACAACAAAAAGAAAAACAATATAAAG
ATGAAATTCAATTTTTAAAATCTAGAATTGAACAATTATCAAATAATAATAATAATAATA
CAAATACAAATAATACAAXXXXXXXXXXAACAATTTTTCATTAATAATAAATAATAATAA
TAATAATAATAAATAAAATTTTTAATTTTAATAAAATTATTATTATTATTTTTTTTTAAA
ATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12. 2
Translated Amino Acid sequence 
lni**ink*IKMTVLLEQEYKNEIDTKVFKVLVAFSQSIERSLINNQNTLHQAENSLNIN
INTQAQAIDSSQFDSSNLGLYTVQLVRNVIKRSNDLSDEFNSLVNTITQQQQQKEKQYKD
EIQFLKSRIEQLSNNNNNNTNTNNT---

---NNFSLIINNNNNNNK*nf*f**nyyyyfflkfkkkkkkkkkkkkkkkkkkkkkkkkk
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
v*iynk*ink*k*lyy*nknirtklilkylkf**hfhkv*kdh**tikihyikqrih*i*
ilihkhkllihhslihri*dytlfn*leml*kdqmiypmnsip**iq*hnnnnkkknnik
mkfnf*nlelnnyqiiiiiiqiqiiq---

---NNFSLIINNNNNNNK*nf*f**nyyyyfflkfkkkkkkkkkkkkkkkkkkkkkkkkk
kkk

Frame B:
skyiink*inkndciirtri*ern*y*si*sfssiftkyrkiinkqskyitssrefikyk
y*ytstsy*fitv*fiefriihcsis*kcykkik*fir*iqflskynntttttkrkti*r
*nsifki*n*tiik*****ykyk*y---

---tifh***iiiiiiinkifnfnkiiiiiff*nlkkkkkkkkkkkkkkkkkkkkkkkkk
kkk

Frame C:
lni**ink*IKMTVLLEQEYKNEIDTKVFKVLVAFSQSIERSLINNQNTLHQAENSLNIN
INTQAQAIDSSQFDSSNLGLYTVQLVRNVIKRSNDLSDEFNSLVNTITQQQQQKEKQYKD
EIQFLKSRIEQLSNNNNNNTNTNNT---

---qffinnk*******ikflilikllllfffki*kkkkkkkkkkkkkkkkkkkkkkkkk
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL151 (SSL151Q) /CSM/SS/SSL1-C/SSL151Q.Seq.d/                        547   e-155
SSK527 (SSK527Q) /CSM/SS/SSK5-B/SSK527Q.Seq.d/                        547   e-155
SSL442 (SSL442Q) /CSM/SS/SSL4-B/SSL442Q.Seq.d/                        412   e-114
SSD530 (SSD530Q) /CSM/SS/SSD5-B/SSD530Q.Seq.d/                        301   7e-81
VSK341 (VSK341Q) /CSM/VS/VSK3-B/VSK341Q.Seq.d/                         40   0.040
VHJ542 (VHJ542Q) /CSM/VH/VHJ5-B/VHJ542Q.Seq.d/                         40   0.040
VHB385 (VHB385Q) /CSM/VH/VHB3-D/VHB385Q.Seq.d/                         40   0.040
VHA187 (VHA187Q) /CSM/VH/VHA1-D/VHA187Q.Seq.d/                         40   0.040
SSG273 (SSG273Q) /CSM/SS/SSG2-D/SSG273Q.Seq.d/                         40   0.040
SFL418 (SFL418Q) /CSM/SF/SFL4-A/SFL418Q.Seq.d/                         40   0.040
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL445204|AL445204.3 Human DNA sequence from clone RP11-232K22 on chromosome 13 Contains  STSs and GSSs.    36  0.17  4
AQ377385|AQ377385.1 RPCI-11-162L10.TJ RPCI-11 Homo sapiens genomic clone RPCI-11- 162L10, genomic survey sequence.    34  0.36  2
AF257638|AF257638.1 Drosophila simulans strain CT96_2s hexokinase-t1 and hexokinase-t2 genes, complete cds.    46  0.52  1
BM394261|BM394261.1 50072-2-2-G12.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    46  0.52  1
BM394260|BM394260.1 50072-2-2-G12.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    46  0.52  1
BM392881|BM392881.1 50071-2-2-G12.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    46  0.52  1
AX344664|AX344664.1 Sequence 89 from Patent WO0200927.            46  0.52  1
BX284669|BX284669.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-280E18.    40  1.2  2
AC136128|AC136128.2 Rattus norvegicus clone CH230-143J12, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    38  1.4  3
AC131720|AC131720.1 Mus musculus chromosome UNK clone RP23-137I3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    44  2.1  1
dna update 2003. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF128452_1(AF128452|pid:none) Borrelia turicatae plasmid-encoded...    36   0.79
AF128451_1(AF128451|pid:none) Borrelia turicatae plasmid-encoded...    36   0.79
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    35   1.8
CP000985_19(CP000985|pid:none) Borrelia duttonii Ly plasmid pl35...    34   3.0
(P19584) RecName: Full=Thermophilic beta-amylase;          EC=3....    34   3.0
BX927142_1(BX927142|pid:none) Zebrafish DNA sequence from clone ...    34   3.0
AC116986_82(AC116986|pid:none) Dictyostelium discoideum chromoso...    34   3.9
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    33   5.1
CP000942_499(CP000942|pid:none) Ureaplasma parvum serovar 3 str....    33   5.1
CP000978_1(CP000978|pid:none) Borrelia duttonii Ly plasmid pl15,...    33   6.7
protein update 2009. 6.14
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSL151 is cyt
5' end seq. ID SSL151F
5' end seq. 
>SSL151F.Seq
GTCTAAATATATAATAAATAAATAAATAAATAAAAATGACTGTATTATTAGAACAAGAAT
ATAAGAACGAAATTGATACTAAAGTATTTAAAGTTTTAGTAGCATTTTCACAAAGTATAG
AAAGATCATTAATAAACAATCAAAATACATTACATCAAGCAGAGAATTCATTAAATATAA
ATATTAATACACAAGCACAAGCTATTGATTCATCACAGTTTGATTCATCGAATTTAGGAT
TATACACTGTTCAATTAGTTAGAAATGTTATAAAAAGATCAAATGATTTATCCGATGAAT
TCAATTCCTTAGTAAATACAATAACACAACAACAACAACAAAAAGAAAAACAATATAAAG
ATGAAATTCAATTTTTAAAATCTAGAATTGAACAATTATCAAATAATAATAATAATAATA
CAAATACAAATAATACAA----------
Length of 5' end seq. 438
3' end seq. ID SSL151Z
3' end seq. 
>SSL151Z.Seq
----------AACAATTTTTCATTAATAATAAATAATAATAATAATAATAATAAATAAAA
TTTTTAATTTTAATAAAATTATTATTATTATTTTTTTTTAAAATTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
Length of 3' end seq. 182
Connected seq. ID SSL151P
Connected seq. 
>SSL151P.Seq
GTCTAAATATATAATAAATAAATAAATAAATAAAAATGACTGTATTATTAGAACAAGAAT
ATAAGAACGAAATTGATACTAAAGTATTTAAAGTTTTAGTAGCATTTTCACAAAGTATAG
AAAGATCATTAATAAACAATCAAAATACATTACATCAAGCAGAGAATTCATTAAATATAA
ATATTAATACACAAGCACAAGCTATTGATTCATCACAGTTTGATTCATCGAATTTAGGAT
TATACACTGTTCAATTAGTTAGAAATGTTATAAAAAGATCAAATGATTTATCCGATGAAT
TCAATTCCTTAGTAAATACAATAACACAACAACAACAACAAAAAGAAAAACAATATAAAG
ATGAAATTCAATTTTTAAAATCTAGAATTGAACAATTATCAAATAATAATAATAATAATA
CAAATACAAATAATACAA----------AACAATTTTTCATTAATAATAAATAATAATAA
TAATAATAATAAATAAAATTTTTAATTTTAATAAAATTATTATTATTATTTTTTTTTAAA
ATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 620
Full length Seq ID -
Full length Seq. -
Length of full length seq. -