>SSL148 (SSL148Q) /CSM/SS/SSL1-B/SSL148Q.Seq.d/
CGAAACCAAATTTGTATATATATATATTTAATAAGAAAAAAAAAAAAAAAAAAACCAATT
ATAGTAAAAAAATGACAGANACAAATATAGATATAAATTCATTAAATATTAAAGAAAAAG
AAGAAAAAGAAGAAGGATTAATTAAAGATAAATCTAAAAAAGAATTAAAAAAATTACAAA
AACAACAATATAAACAACAAAAGAAACAAGAAAAAAAGAATAATAAAGTTAATAAAGTTA
TTAATGAAGGAGTACCAGAGATTAGTGATGAGAAAATCAATTTTTCAGAACCAAAAACTG
ATAGAGAAGCATATCAAGTTGAAGTTAAACATGTTCGTGAAATTTATGATCGTATTGCAC
TACATTTCGATAGTACACGTTATAAAGCATGGCCAATTGTTGAAAACTTTTTAGGAAAAG
TTGAAATTGGTTCAATTGGTATCGATGTTGGTTGTGGTAATGGTAAATACCTTGGTATAA
ATAAAGATAGTCATTTAATCGGTTCTGATATTTGTAATAATTTCGCATCAATTTGTAATG
AAAAACATTATGAATCATTAGTTGCTGATAATCTTTATTTACCATATAAXXXXXXXXXX

KPNLYIYIFNKKKKKKKTNYSKKMTXTNIDINSLNIKEKEEKEEGLIKDKSKKELKKLQK
QQYKQQKKQEKKNNKVNKVINEGVPEISDEKINFSEPKTDREAYQVEVKHVREIYDRIAL
HFDSTRYKAWPIVENFLGKVEIGSIGIDVGCGNGKYLGINKDSHLIGSDICNNFASICNE
KHYESLVADNLYLPY---

Frame A:
rnqiciyiylirkkkkkkpiivkk*qxqi*i*ih*ilkkkkkkkkd*lkinlkkn*knyk
nnninnkrnkkkriiklikllmkeyqrlvmrksifqnqkliekhiklklnmfvkfmivlh
yisivhvikhgqllktf*eklklvqlvsmlvvvmvntlv*ikivi*svlifviishqfvm
knimnh*lliifiyhi---


Frame B:
etkfvyiyi**ekkkkknql**kndrxkyrykfiky*rkrrkrrrin*r*i*krikkitk
tti*ttketrkke**s**sy**rstrd***enqffrtkn**rsiss*s*tcs*nl*syct
tfr*ytl*smanc*klfrks*nwfnwyrcwlw*w*ipwyk*r*sfnrf*yl**frinl**
ktl*iisc**slfti---


Frame C:
KPNLYIYIFNKKKKKKKTNYSKKMTXTNIDINSLNIKEKEEKEEGLIKDKSKKELKKLQK
QQYKQQKKQEKKNNKVNKVINEGVPEISDEKINFSEPKTDREAYQVEVKHVREIYDRIAL
HFDSTRYKAWPIVENFLGKVEIGSIGIDVGCGNGKYLGINKDSHLIGSDICNNFASICNE
KHYESLVADNLYLPY---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL148 (SSL148Q) /CSM/SS/SSL1-B/SSL148Q.Seq.d/                        737   0.0
SSM315 (SSM315Q) /CSM/SS/SSM3-A/SSM315Q.Seq.d/                         42   0.010
SHF854 (SHF854Q) /CSM/SH/SHF8-C/SHF854Q.Seq.d/                         40   0.038
CHS278 (CHS278Q) /CSM/CH/CHS2-D/CHS278Q.Seq.d/                         40   0.038
CHR558 (CHR558Q) /CSM/CH/CHR5-C/CHR558Q.Seq.d/                         40   0.038
CHQ635 (CHQ635Q) /CSM/CH/CHQ6-B/CHQ635Q.Seq.d/                         40   0.038
CHQ541 (CHQ541Q) /CSM/CH/CHQ5-B/CHQ541Q.Seq.d/                         40   0.038
CHP731 (CHP731Q) /CSM/CH/CHP7-B/CHP731Q.Seq.d/                         40   0.038
CHM818 (CHM818Q) /CSM/CH/CHM8-A/CHM818Q.Seq.d/                         40   0.038
CHG874 (CHG874Q) /CSM/CH/CHG8-D/CHG874Q.Seq.d/                         38   0.15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX510940|BX510940.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  0.002  2
D31785|D31785.1 Pichia canadensis mitochondrial DNA, complete sequence.    44  0.003  3
AF481924|AF481924.1 Dictyostelium discoideum cyclic GMP-binding protein D (gbpD) gene, complete cds.    40  0.005  3
BX323884|BX323884.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-187A12.    42  0.010  5
AL109653|AL109653.14 Human DNA sequence from clone GS1-115M3 on chromosome Xq27.1-28.    50  0.032  1
AJ289906|AJ289906.1 Pauesia unilachni partial ef-1alpha gene for elongation factor-1  alpha, population 1.    50  0.032  1
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          50  0.032  1
AL606659|AL606659.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16.    44  0.044  3
AL589671|AL589671.13 Human DNA sequence from clone RP11-550B3 on chromosome X Contains  STSs.    50  0.067  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32  0.21  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270155_27(AM270155|pid:none) Aspergillus niger contig An07c038...   107   2e-22
(Q80Y20) RecName: Full=Alkylated DNA repair protein alkB homolog...   107   3e-22
AK081459_1(AK081459|pid:none) Mus musculus 16 days embryo head c...   107   3e-22
(Q96BT7) RecName: Full=Alkylated DNA repair protein alkB homolog...   103   3e-21
AK293603_1(AK293603|pid:none) Homo sapiens cDNA FLJ55535 complet...   103   3e-21
(A1A4L5) RecName: Full=Alkylated DNA repair protein alkB homolog...   103   3e-21
AK298800_1(AK298800|pid:none) Homo sapiens cDNA FLJ54646 complet...   103   3e-21
(Q95K79) RecName: Full=Alkylated DNA repair protein alkB homolog...   102   8e-21
CU928176_553(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   100   3e-20
T49847(T49847)hypothetical protein B24P11.30 [imported] - Neuros...    99   7e-20

 psg: 0.17  gvh: 0.15  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.29  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSL148 is nuc

>SSL148F.Seq
CGAAACCAAATTTGTATATATATATATTTAATAAGAAAAAAAAAAAAAAAAAAACCAATT
ATAGTAAAAAAATGACAGANACAAATATAGATATAAATTCATTAAATATTAAAGAAAAAG
AAGAAAAAGAAGAAGGATTAATTAAAGATAAATCTAAAAAAGAATTAAAAAAATTACAAA
AACAACAATATAAACAACAAAAGAAACAAGAAAAAAAGAATAATAAAGTTAATAAAGTTA
TTAATGAAGGAGTACCAGAGATTAGTGATGAGAAAATCAATTTTTCAGAACCAAAAACTG
ATAGAGAAGCATATCAAGTTGAAGTTAAACATGTTCGTGAAATTTATGATCGTATTGCAC
TACATTTCGATAGTACACGTTATAAAGCATGGCCAATTGTTGAAAACTTTTTAGGAAAAG
TTGAAATTGGTTCAATTGGTATCGATGTTGGTTGTGGTAATGGTAAATACCTTGGTATAA
ATAAAGATAGTCATTTAATCGGTTCTGATATTTGTAATAATTTCGCATCAATTTGTAATG
AAAAACATTATGAATCATTAGTTGCTGATAATCTTTATTTACCATATAA----------