>SSL136 (SSL136Q) /CSM/SS/SSL1-B/SSL136Q.Seq.d/
XXXXXXXXXXTTATGAGGGTGGTATTTTTCAAATTCAAATGAAATTTCCAAATGATTCTC
CAATGAGTCCGCCAGTCTTAATTTTCCAATCCGAATTTTGGCATCCAAATGTTTACCCAG
ATGGTAAAGTTTGTATTTCAATTTTACATCCACCAGGTGAAGATGAAACATCTGGTGAAT
TACCAGAAGAAAGATGGTTACCAACACAAACAGTTCAAACAATTATATTAAGTGTAATTT
CATTATTAAGCGCACCAAATACATCATCACCAGCCAATGTTGATGCATCAGTTGAATGGA
GAAACAATAGGGATAATTACAAAAAGAGAATTAGAGAATTAGTTCAAAAAGCAAACTTAA
AAGTACCATCACATATTAAAATTCCACATCCAGATACAGATCCAGTCGAAAGAGCAAAAC
AAGTAGAAAAAATTAAACTTTTAAATAAGCCAATGGATTTCTATGATGATTATGATGATG
ATAACTATGATTATGATGATTATGAAGAAAATGATGATGATGAAGATAACGAAGATTATA
ATGATGATGATGATGAAGGTATTGATGAAGAAGATGATGATTAAAATAAATTAAATTTGA
AAATAAAATAATAAAAACACAATCAACATGAATATTCAAAAAAAAAAAAAAAAAAACAAA
ACTTTTATAATAAAAACAAATTTTTATTATTAGTTTATATTTGTAATA

---YEGGIFQIQMKFPNDSPMSPPVLIFQSEFWHPNVYPDGKVCISILHPPGEDETSGEL
PEERWLPTQTVQTIILSVISLLSAPNTSSPANVDASVEWRNNRDNYKKRIRELVQKANLK
VPSHIKIPHPDTDPVERAKQVEKIKLLNKPMDFYDDYDDDNYDYDDYEENDDDEDNEDYN
DDDDEGIDEEDDD*nklnlkik**khnqheyskkkkkkqnfynknkflllvyicn

Frame A:
---YEGGIFQIQMKFPNDSPMSPPVLIFQSEFWHPNVYPDGKVCISILHPPGEDETSGEL
PEERWLPTQTVQTIILSVISLLSAPNTSSPANVDASVEWRNNRDNYKKRIRELVQKANLK
VPSHIKIPHPDTDPVERAKQVEKIKLLNKPMDFYDDYDDDNYDYDDYEENDDDEDNEDYN
DDDDEGIDEEDDD*nklnlkik**khnqheyskkkkkkqnfynknkflllvyicn


Frame B:
---mrvvffkfk*nfqmilq*vrqs*fsnpnfgiqmftqmvkfvfqfyihqvkmkhlvny
qkkdgyqhkqfkqly*v*fhy*ahqihhhqpmlmhqlngetigiitkrelen*fkkqt*k
yhhilkfhiqiqiqskeqnk*kklnf*isqwismmimmmitmimmimkkmmmmkitkiim
mmmmkvlmkkmmikin*i*k*nnkntinmniqkkkkknktfiiktnfyy*fifvi


Frame C:
---*gwyfsnsneisk*fsnesaslnfpirilaskclprw*slyfnftstr*r*niw*it
rrkmvtntnssnnyikcnfiikrtkyiitsqc*cis*mekq*g*lqken*rissksklks
tity*nstsryrssrksktsrkn*tfk*angfl**l****l*l**l*rk****r*rrl**
****ry**rr**lk*ikfenkiiktqst*ifkkkkkktkll**kqifiislyl*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL136 (SSL136Q) /CSM/SS/SSL1-B/SSL136Q.Seq.d/                        894   0.0
VFF693 (VFF693Q) /CSM/VF/VFF6-D/VFF693Q.Seq.d/                        886   0.0
CFA412 (CFA412Q) /CSM/CF/CFA4-A/CFA412Q.Seq.d/                        860   0.0
SSJ741 (SSJ741Q) /CSM/SS/SSJ7-B/SSJ741Q.Seq.d/                        789   0.0
SSG850 (SSG850Q) /CSM/SS/SSG8-C/SSG850Q.Seq.d/                        690   0.0
SSA885 (SSA885Q) /CSM/SS/SSA8-D/SSA885Q.Seq.d/                        626   e-178
VSG829 (VSG829Q) /CSM/VS/VSG8-B/VSG829Q.Seq.d/                        591   e-168
SSE829 (SSE829Q) /CSM/SS/SSE8-B/SSE829Q.Seq.d/                        325   5e-88
SSA492 (SSA492Q) /CSM/SS/SSA4-D/SSA492Q.Seq.d/                        236   4e-61
SSC667 (SSC667Q) /CSM/SS/SSC6-C/SSC667Q.Seq.d/                        157   3e-37

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF076597|AF076597.1 Dictyostelium discoideum ubiquitin-conjugating enzyme protein UbcC (ubcC) mRNA, complete cds.   886  0.0  2
AZ543931|AZ543931.1 ENTEU64TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68  3e-17  3
AZ675918|AZ675918.1 ENTMS12TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68  3e-17  3
CD668851|CD668851.1 eec1c.pk007.j16 eec1c Eucalyptus tereticornis cDNA clone eec1c.pk007.j16 5' end, mRNA sequence.    68  2e-07  1
BU884919|BU884919.1 R017H10 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    68  2e-07  1
BU873627|BU873627.1 Q057F04 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    60  4e-05  1
BU872705|BU872705.1 Q045H12 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    60  4e-05  1
BU870104|BU870104.1 Q008G05 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    60  4e-05  1
BU832592|BU832592.1 T035H12 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    60  4e-05  1
BU877792|BU877792.1 V039C06 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    60  4e-05  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF076597_1(AF076597|pid:none) Dictyostelium discoideum ubiquitin...   310   3e-83
AK099038_1(AK099038|pid:none) Oryza sativa Japonica Group cDNA c...   156   7e-37
AC117265_6(AC117265|pid:none) Oryza sativa (japonica cultivar-gr...   154   2e-36
EF083334_1(EF083334|pid:none) Picea sitchensis clone WS02724_H13...   154   3e-36
DQ887086_1(DQ887086|pid:none) Arachis hypogaea ubiquitin-conjuga...   154   3e-36
EF084843_1(EF084843|pid:none) Picea sitchensis clone WS0291_G02 ...   151   2e-35
BT038770_1(BT038770|pid:none) Zea mays full-length cDNA clone ZM...   150   4e-35
(P42747) RecName: Full=Ubiquitin-conjugating enzyme E2 14;      ...   150   5e-35
EU963442_1(EU963442|pid:none) Zea mays clone 262526 ubiquitin-co...   149   1e-34
(Q42540) RecName: Full=Ubiquitin-conjugating enzyme E2 7;       ...   149   1e-34

 psg: 0.69  gvh: 0.32  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSL136 is cyt

>SSL136Z.Seq
----------TTATGAGGGTGGTATTTTTCAAATTCAAATGAAATTTCCAAATGATTCTC
CAATGAGTCCGCCAGTCTTAATTTTCCAATCCGAATTTTGGCATCCAAATGTTTACCCAG
ATGGTAAAGTTTGTATTTCAATTTTACATCCACCAGGTGAAGATGAAACATCTGGTGAAT
TACCAGAAGAAAGATGGTTACCAACACAAACAGTTCAAACAATTATATTAAGTGTAATTT
CATTATTAAGCGCACCAAATACATCATCACCAGCCAATGTTGATGCATCAGTTGAATGGA
GAAACAATAGGGATAATTACAAAAAGAGAATTAGAGAATTAGTTCAAAAAGCAAACTTAA
AAGTACCATCACATATTAAAATTCCACATCCAGATACAGATCCAGTCGAAAGAGCAAAAC
AAGTAGAAAAAATTAAACTTTTAAATAAGCCAATGGATTTCTATGATGATTATGATGATG
ATAACTATGATTATGATGATTATGAAGAAAATGATGATGATGAAGATAACGAAGATTATA
ATGATGATGATGATGAAGGTATTGATGAAGAAGATGATGATTAAAATAAATTAAATTTGA
AAATAAAATAATAAAAACACAATCAACATGAATATTCAAAAAAAAAAAAAAAAAAACAAA
ACTTTTATAATAAAAACAAATTTTTATTATTAGTTTATATTTGTAATA