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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL114
Library SS
(Link to library)
Clone ID SSL114
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSL114Z
(Link to Original site)
Representative DNA sequence 
>SSL114 (SSL114Q) /CSM/SS/SSL1-A/SSL114Q.Seq.d/
XXXXXXXXXXTAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTTAAAAA
AAAAATAAAAGATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCC
TTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTT
GCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATC
CTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAAC
AAAAAAAAATATTTA
sequence update 1998. 3. 4
Translated Amino Acid sequence 
---**aipwdlekikkfkkkikdnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALH
YSPQAQIISSSTNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI
Translated Amino Acid sequence (All Frames) 
Frame A:
---nnklyhgt*rk*kslkkk*kiiknkkkikkktfktllllfgasvklmlrclsppllc
itllklr*srapltmllkypqg*sitflcnslkcissl*qkkif


Frame B:
---iisytmglrenkkv*kknkr**kikkk*kkkllklsfyflvllls*c*gvslplcfa
llssssdnlelh*rcsssilrvnpshsyatlsnv*avfnkkkyl


Frame C:
---**aipwdlekikkfkkkikdnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALH
YSPQAQIISSSTNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-107
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-107
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-107
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-107
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-107
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-107
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-107
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-107
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-107
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-107
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   387  e-114  2
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.016  1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  3.9  1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42  3.9  1
AZ122113|AZ122113.1 RPCI-23-450O17.TV RPCI-23 Mus musculus genomic clone RPCI-23-450O17, genomic survey sequence.    36  4.8  2
CF180910|CF180910.1 816077 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence.    40     16  1
AC137335|AC137335.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40     16  1
CF178550|CF178550.1 807639 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence.    40     16  1
CD572367|CD572367.1 PBL_1_G03 Porcine Brain Library Sus scrofa cDNA clone PBL 5', mRNA sequence.    40     16  1
AC097207|AC097207.7 Rattus norvegicus clone CH230-42K23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40     16  1
dna update 2003. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   9.0
protein update 2009. 2. 3
PSORT 

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSL114 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL114Z
3' end seq. 
>SSL114Z.Seq
----------TAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTTAAAAA
AAAAATAAAAGATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCC
TTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTT
GCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATC
CTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAAC
AAAAAAAAATATTTA
Length of 3' end seq. 305
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -