SSL103
Library SS
(Link to library)
Clone ID SSL103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1|Contig-U15665-1
Original site URL
Representative seq. ID SSL103P
(Link to Original site)
Representative DNA sequence
>SSL103 (SSL103Q) /CSM/SS/SSL1-A/SSL103Q.Seq.d/
ATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTTGT
TTTTTTTTTTTTATAATAATTAAATAGAGTAAAAAAAAAAAGTATATATATATTTAAATT
TTATTTAAATGGGTAGTCCAACTATTAGTGATCAAGAAAAATCCCAAGTTGCCTTTATAG
CAGGTAGTAGTTCTGATATTCATTCAACTACTGTTGCAAGATTGTATGAAGGTAGACAAG
GAAGATGGGAATTTATGGCCGTCGGTATTGTTTCTGTTGTTTCAAATCGTGTAGATAAAA
CAAATTATATCAAAGTTTTCGATTTAAAGGCCAACTACAGAATCATTTTTGAACAAGAAA
TTTATGACACTTTTGAATTTCAAAAACAAAGAGATTTCTTTTTTGCATTTGAAGGTGATT
CCTGTGTTTATGGCTTATCATTTGCTGATGTAACTGAAGCAGCTGAATTCTATGGCCAAC
TTTTAAATTGTAAACAAGGAAATATTGGTAAAACTGCTGCAATTAATCCAAATACTTCTT
CAACCAAAATTACTGCATCAACACCAGCACCAAAAGTTGAAAAGAAAAXXXXXXXXXXTT
GGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAACACCAACTTCAATACAC
ACGCATATATGTTTATGTTTTTTCCCTCAACACATTTGATTTTCTTTAATACTTGTAAAA
TATTCATTTCAAAACTTTTTTTTTATTATTTTTTAACATNNNTTATATGTATATAAATAT
ATATATAAATAAAAATAATATCATTTGCATATTTTTATACACACAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12. 2
Translated Amino Acid sequence
ff*htlfytynivfsfynlffffynn*ie*kkkvyiylnfi*MGSPTISDQEKSQVAFIA
GSSSDIHSTTVARLYEGRQGRWEFMAVGIVSVVSNRVDKTNYIKVFDLKANYRIIFEQEI
YDTFEFQKQRDFFFAFEGDSCVYGLSFADVTEAAEFYGQLLNCKQGNIGKTAAINPNTSS
TKITASTPAPKVEKK---

---LVKKKKKKKKKKKKKHQLQYTRIYVYVFSLNTFDFL*yl*nihfktffllffnxxym
yiniyinknniiciflytqkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iffnthffihii*flvfiicffffiiik*skkkkyiyi*ilfkwvvqllvikknpklpl*
qvvvlifiqlllqdcmkvdkedgnlwpsvlfllfqiv*ikqiiskfsi*rpttesflnkk
fmtllnfknkeisflhlkvipvfmayhllm*lkqlnsmanf*ivnkeilvkllqliqill
qpkllhqhqhqklkrk---

---LVKKKKKKKKKKKKKHQLQYTRIYVYVFSLNTFDFL*yl*nihfktffllffnxxym
yiniyinknniiciflytqkkkkkkkkkkkkkkkk

Frame B:
fflthtflyi*ysf*fl*fvfffl**lnrvkkksiyifkfylng*sny**srkipsclys
r**f*ysfnycckiv*r*trkmgiygrrycfccfkscr*nklyqsfrfkgqlqnhf*trn
l*hf*isktkrflfci*r*flclwliic*cn*ss*ilwptfkl*trkyw*nccn*skyff
nqnycintstks*ke---

---w*kkkkkkkkkrkkntnfnthaymfmffpsthliffntckifisklffyyfltxxic
i*iyi*ikiisfayfythkkkkkkkkkkkkkkkkk

Frame C:
ff*htlfytynivfsfynlffffynn*ie*kkkvyiylnfi*MGSPTISDQEKSQVAFIA
GSSSDIHSTTVARLYEGRQGRWEFMAVGIVSVVSNRVDKTNYIKVFDLKANYRIIFEQEI
YDTFEFQKQRDFFFAFEGDSCVYGLSFADVTEAAEFYGQLLNCKQGNIGKTAAINPNTSS
TKITASTPAPKVEKK---

---gkkkkkkkkkkekktptsihthiclcffpqhi*fslilvkysfqnfffiif*hxlyv
ykyiyk*k*yhlhifihtkkkkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL103 (SSL103Q) /CSM/SS/SSL1-A/SSL103Q.Seq.d/ 965 0.0
AFG687 (AFG687Q) /CSM/AF/AFG6-D/AFG687Q.Seq.d/ 936 0.0
VSJ735 (VSJ735Q) /CSM/VS/VSJ7-B/VSJ735Q.Seq.d/ 787 0.0
CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/ 765 0.0
SFG565 (SFG565Q) /CSM/SF/SFG5-C/SFG565Q.Seq.d/ 529 e-149
SSE439 (SSE439Q) /CSM/SS/SSE4-B/SSE439Q.Seq.d/ 165 1e-39
SSM585 (SSM585Q) /CSM/SS/SSM5-D/SSM585Q.Seq.d/ 101 2e-20
VSC304 (VSC304Q) /CSM/VS/VSC3-A/VSC304Q.Seq.d/ 84 4e-15
VFE551 (VFE551Q) /CSM/VF/VFE5-C/VFE551Q.Seq.d/ 48 2e-04
VSI429 (VSI429Q) /CSM/VS/VSI4-B/VSI429Q.Seq.d/ 40 0.056

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds. 454 0.0 4
AP001457|AP001457.2 Homo sapiens genomic DNA, chromosome 18q21 clone:RP11-824D7, WORKING DRAFT SEQUENCE, 23 unordered pieces. 40 0.024 7
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence. 34 0.038 8
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5. 48 0.040 3
BX569789|BX569789.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-68O6. 50 0.047 1
BZ504492|BZ504492.1 BONFQ63TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONFQ63, DNA sequence. 50 0.047 1
AL136293|AL136293.5 Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from chromosome 14 of Homo sapiens (Human). 50 0.047 1
BH587033|BH587033.1 BOHPB95TR BOHP Brassica oleracea genomic clone BOHPB95, DNA sequence. 50 0.047 1
BZ698223|BZ698223.1 PUCDB83TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa118N22, DNA sequence. 48 0.18 1
CC400957|CC400957.1 PUHOA23TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa495C21, DNA sequence. 48 0.18 1
dna update 2003. 8. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A... 306 4e-82
FN392319_1421(FN392319|pid:none) Pichia pastoris GS115 chromosom... 75 4e-12
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric... 74 6e-12
CU928176_622(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 72 2e-11
CR380953_413(CR380953|pid:none) Candida glabrata strain CBS138 c... 72 2e-11
CP000497_454(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 70 1e-10
(Q12446) RecName: Full=Proline-rich protein LAS17; &AX167565_1(... 69 2e-10
CR382137_196(CR382137|pid:none) Debaryomyces hansenii strain CBS... 69 2e-10
AE016820_654(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 69 3e-10
BC066424_1(BC066424|pid:none) Danio rerio Wiskott-Aldrich syndro... 67 8e-10
protein update 2009. 6.14
PSORT

psg: 0.75 gvh: 0.52 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.53 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSL103 is nuc

5' end seq. ID SSL103F
5' end seq.
>SSL103F.Seq
ATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTTGT
TTTTTTTTTTTTATAATAATTAAATAGAGTAAAAAAAAAAAGTATATATATATTTAAATT
TTATTTAAATGGGTAGTCCAACTATTAGTGATCAAGAAAAATCCCAAGTTGCCTTTATAG
CAGGTAGTAGTTCTGATATTCATTCAACTACTGTTGCAAGATTGTATGAAGGTAGACAAG
GAAGATGGGAATTTATGGCCGTCGGTATTGTTTCTGTTGTTTCAAATCGTGTAGATAAAA
CAAATTATATCAAAGTTTTCGATTTAAAGGCCAACTACAGAATCATTTTTGAACAAGAAA
TTTATGACACTTTTGAATTTCAAAAACAAAGAGATTTCTTTTTTGCATTTGAAGGTGATT
CCTGTGTTTATGGCTTATCATTTGCTGATGTAACTGAAGCAGCTGAATTCTATGGCCAAC
TTTTAAATTGTAAACAAGGAAATATTGGTAAAACTGCTGCAATTAATCCAAATACTTCTT
CAACCAAAATTACTGCATCAACACCAGCACCAAAAGTTGAAAAGAAAA----------
Length of 5' end seq. 588
3' end seq. ID SSL103Z
3' end seq.
>SSL103Z.Seq
----------TTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAACACCA
ACTTCAATACACACGCATATATGTTTATGTTTTTTCCCTCAACACATTTGATTTTCTTTA
ATACTTGTAAAATATTCATTTCAAAACTTTTTTTTTATTATTTTTTAACATNNNTTATAT
GTATATAAATATATATATAAATAAAAATAATATCATTTGCATATTTTTATACACACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 277
Connected seq. ID SSL103P
Connected seq.
>SSL103P.Seq
ATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTTGT
TTTTTTTTTTTTATAATAATTAAATAGAGTAAAAAAAAAAAGTATATATATATTTAAATT
TTATTTAAATGGGTAGTCCAACTATTAGTGATCAAGAAAAATCCCAAGTTGCCTTTATAG
CAGGTAGTAGTTCTGATATTCATTCAACTACTGTTGCAAGATTGTATGAAGGTAGACAAG
GAAGATGGGAATTTATGGCCGTCGGTATTGTTTCTGTTGTTTCAAATCGTGTAGATAAAA
CAAATTATATCAAAGTTTTCGATTTAAAGGCCAACTACAGAATCATTTTTGAACAAGAAA
TTTATGACACTTTTGAATTTCAAAAACAAAGAGATTTCTTTTTTGCATTTGAAGGTGATT
CCTGTGTTTATGGCTTATCATTTGCTGATGTAACTGAAGCAGCTGAATTCTATGGCCAAC
TTTTAAATTGTAAACAAGGAAATATTGGTAAAACTGCTGCAATTAATCCAAATACTTCTT
CAACCAAAATTACTGCATCAACACCAGCACCAAAAGTTGAAAAGAAAA----------TT
GGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAACACCAACTTCAATACAC
ACGCATATATGTTTATGTTTTTTCCCTCAACACATTTGATTTTCTTTAATACTTGTAAAA
TATTCATTTCAAAACTTTTTTTTTATTATTTTTTAACATNNNTTATATGTATATAAATAT
ATATATAAATAAAAATAATATCATTTGCATATTTTTATACACACAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 865
Full length Seq ID -
Full length Seq. -
Length of full length seq. -