>SSK863 (SSK863Q) /CSM/SS/SSK8-C/SSK863Q.Seq.d/
XXXXXXXXXXCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGTACTACCATTAG
TCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGC
TACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTTATGGATATGGT
TACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTG
GTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCC
ACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCA
ATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTT
CGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTT
CACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCACACAACTGGTAA
AGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTA
CTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAA
ACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCTGGTTTACCATAAATAAAAATAAG
TTTTAAACATTTTGTAATTTTA

---TSFNAQTNWPNCTTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVT
CDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQS
NSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKD
LGGHCVKLVGFGTLNGVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVAGLP*ikisf
khfvil

Frame A:
---qllsmlkptgqivlplvrfkikqdvvlvgllvlqnqllivyvftimkmfn*vlwiwl
lvmklitvvkvvmpslhgig*eskvlyqknvfhiqfqlvhqlnnhv*ilstlhhvlksvn
qipl*filktnikwlkfilstlmkqsckklllmvqsklvslslkislltnlvftstqlvk
i*vvtvlnslvsvp*mvlitmplttngqlhgvimels*snvviavslmtlllvyhk*k*v
lnil*f


Frame B:
---nffqcsnqlaklyyh*sdsksskmwfllgfwcyrisy*sfmysq**kcsikfygygy
l**n**rl*rw*cllcmelvkkarccirrmssiynsnlstssttmfkfcqhsimy*rvsi
kflfnlfsrqt*ng*nlffrl**snharncy*wssrslfhcl*rfpclqiwclrphnw*r
frwslc*trwfrylkwc*llcr*qpmdnfmg**wnflnqtw*lryl**rccwftinknkf
*tfcnf


Frame C:
---TSFNAQTNWPNCTTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVT
CDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQS
NSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKD
LGGHCVKLVGFGTLNGVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVAGLP*ikisf
khfvil

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK863 (SSK863Q) /CSM/SS/SSK8-C/SSK863Q.Seq.d/                       1451   0.0
SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/                       1451   0.0
VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/                       1417   0.0
SFK635 (SFK635Q) /CSM/SF/SFK6-B/SFK635Q.Seq.d/                       1415   0.0
VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/                       1403   0.0
VFB609 (VFB609Q) /CSM/VF/VFB6-A/VFB609Q.Seq.d/                       1398   0.0
SSK654 (SSK654Q) /CSM/SS/SSK6-C/SSK654Q.Seq.d/                       1392   0.0
SSD418 (SSD418Q) /CSM/SS/SSD4-A/SSD418Q.Seq.d/                       1370   0.0
SSK787 (SSK787Q) /CSM/SS/SSK7-D/SSK787Q.Seq.d/                       1362   0.0
VFI438 (VFI438Q) /CSM/VF/VFI4-B/VFI438Q.Seq.d/                       1360   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG132206|BG132206.1 EST465098 tomato crown gall Lycopersicon esculentum cDNA clone cTOE6F18 5' sequence, mRNA sequence.    54  4e-05  2
BF187223|BF187223.1 EST443510 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA39F1 5' sequence, mRNA sequence.    54  0.003  1
AW651312|AW651312.1 EST329766 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI16A22 5', mRNA sequence.    54  0.003  1
AI772499|AI772499.1 EST253599 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER2J6, mRNA sequence.    54  0.003  1
BE436257|BE436257.1 EST407335 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG31A14, mRNA sequence.    54  0.003  1
CB290208|CB290208.1 UCRCS01_01aa10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.    54  0.003  1
CB292489|CB292489.1 UCRCS01_04cd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence.    54  0.003  1
BM413574|BM413574.1 EST587901 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG63F18 5' end, mRNA sequence.    54  0.003  1
BQ119333|BQ119333.2 EST604909 mixed potato tissues Solanum tuberosum cDNA clone STMEI96 5' end, mRNA sequence.    54  0.003  1
BE433115|BE433115.1 EST399644 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG12E22, mRNA sequence.    54  0.003  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QD9) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   501   e-141
BC072490_1(BC072490|pid:none) Rattus norvegicus cathepsin B, mRN...   237   2e-61
(P00787) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   237   2e-61
M11305_1(M11305|pid:none) Rat cathepsin B mRNA, 3' end.               237   2e-61
(P07688) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   236   7e-61
(A1E295) RecName: Full=Cathepsin B;          EC=3.4.22.1; Contai...   236   7e-61
EU532428_1(EU532428|pid:none) Sus scrofa cathepsin B (CTSB) gene...   234   2e-60
BC115254_1(BC115254|pid:none) Danio rerio capthepsin B, b, mRNA ...   233   6e-60
AC149038_4(AC149038|pid:none) Medicago truncatula chromosome 7 c...   231   1e-59
AB377273_1(AB377273|pid:none) Raphanus sativus CatB mRNA for cat...   231   2e-59

 psg: 0.81  gvh: 0.46  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSK863 is nuc

>SSK863Z.Seq
----------CCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGTACTACCATTAG
TCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGC
TACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTTATGGATATGGT
TACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTG
GTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCC
ACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCA
ATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTT
CGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTT
CACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCACACAACTGGTAA
AGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTA
CTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAA
ACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCTGGTTTACCATAAATAAAAATAAG
TTTTAAACATTTTGTAATTTTA