NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK827
Library SS
(Link to library)
Clone ID SSK827
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08780-1
Original site URL
Representative seq. ID SSK827E
(Link to Original site)
Representative DNA sequence 
>SSK827 (SSK827Q) /CSM/SS/SSK8-B/SSK827Q.Seq.d/
GTACCAACATTCATACCACGTTATAATGGTAACTCATTATTAGTTTGGTCTCCAAAAAAT
GATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGAATTTTCGATATCTCAAAATGGGAT
TACAATAATAAAGAATGGCCAATGTTAACAAATTATCAAACAGGATCATGGAATGGAAAA
GGTGAATATTTAGCAGTTGCAAGTGGTGATAGAATTCAGTTTATTCAATGTATAAATAGA
GCATTTGAATCAGGTGGTGAATTAATGTATGTTGAGAAAACTTCAACCTATAGATTACAA
AATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGTGAATTATTTTTAGGCGGACATATA
AAGAAAATTGCATGGTCACCTGATAGTCAAAGATTGGCTGTCATCTTTTATTTAAATAGC
AAGAGTAGAAATAATGATACTTATTGTGCAATCTATAAAATTAAAACTTATCCTAAATTT
TCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTT
GTCCCAAATTATAAAAAAGGTTCTTTATTATCAATTGCCTACAATGATGGAACAATTAAA
TTTTTCCCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACACTTTATTAT
CATTATATTATTAAAAAAAAAAAA
sequence update 1998. 2.27
Translated Amino Acid sequence 
VPTFIPRYNGNSLLVWSPKNDYLLSCGGKTCRIFDISKWDYNNKEWPMLTNYQTGSWNGK
GEYLAVASGDRIQFIQCINRAFESGGELMYVEKTSTYRLQNVGGSGGGSSSSELFLGGHI
KKIAWSPDSQRLAVIFYLNSKSRNNDTYCAIYKIKTYPKFSVTPRGFIRSKDQSIQSVSF
VPNYKKGSLLSIAYNDGTIKFFPLLYQYKQ*enkdftlyyhyiikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
VPTFIPRYNGNSLLVWSPKNDYLLSCGGKTCRIFDISKWDYNNKEWPMLTNYQTGSWNGK
GEYLAVASGDRIQFIQCINRAFESGGELMYVEKTSTYRLQNVGGSGGGSSSSELFLGGHI
KKIAWSPDSQRLAVIFYLNSKSRNNDTYCAIYKIKTYPKFSVTPRGFIRSKDQSIQSVSF
VPNYKKGSLLSIAYNDGTIKFFPLLYQYKQ*enkdftlyyhyiikkkk


Frame B:
yqhsyhvimvthy*fglqkmiifylvvvklvefsisqngitiikngqc*qiikqdhgmek
vni*qlqvviefslfnv*iehlnqvvn*cmlrklqpidykmlvvvvvvqvvvnyf*adi*
rklhghlivkdwlssfi*iarveimilivqsiklklilnfl*hqevs*gqkinqfnqfll
sqiikkvlyyqlptmmeqlnfshyyininnkkikilhfiiiillkkk


Frame C:
tnihttl*w*liislvskk*lsfilww*nl*nfrylkmglq**rmanvnklsnrimewkr
*ifssckw**nsvysmyk*si*irw*invc*enfnl*itkcww*wwwfk***iifrrtyk
encmvt**skigchllfk*qe*k**yllcnl*n*nls*ifcntkrfhkvkrsinsisffc
pkl*krffiinclq*wnn*ifpiiisi*tirk*rfytllslyy*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK827 (SSK827Q) /CSM/SS/SSK8-B/SSK827Q.Seq.d/                       1332   0.0
AFI409 (AFI409Q) /CSM/AF/AFI4-A/AFI409Q.Seq.d/                       1318   0.0
AFH742 (AFH742Q) /CSM/AF/AFH7-B/AFH742Q.Seq.d/                       1296   0.0
VFI871 (VFI871Q) /CSM/VF/VFI8-C/VFI871Q.Seq.d/                       1294   0.0
CFG838 (CFG838Q) /CSM/CF/CFG8-B/CFG838Q.Seq.d/                       1221   0.0
CFG822 (CFG822Q) /CSM/CF/CFG8-A/CFG822Q.Seq.d/                        553   e-156
SSE416 (SSE416Q) /CSM/SS/SSE4-A/SSE416Q.Seq.d/                        184   1e-45
VSB478 (VSB478Q) /CSM/VS/VSB4-D/VSB478Q.Seq.d/                        105   9e-22
VSC172 (VSC172Q) /CSM/VS/VSC1-C/VSC172Q.Seq.d/                         46   7e-04
VHH302 (VHH302Q) /CSM/VH/VHH3-A/VHH302Q.Seq.d/                         46   7e-04
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.   829  0.0  3
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    34  0.008  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           42  0.011  9
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    36  0.016  7
AE006297|AE006297.1 Lactococcus lactis subsp. lactis IL1403 section 59 of 218 of the complete genome.    44  0.017  4
AE000658|AE000658.1 Homo sapiens T-cell receptor alpha delta locus from bases 1 to 250529 (section 1 of 5) of the Complete Nucleotide Sequence.    44  0.038  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  0.049  12
AC091476|AC091476.4 Mus musculus chromosome 11 clone RP23-396K24 map 11, WORKING DRAFT SEQUENCE, 6 unordered pieces.    40  0.058  4
AC131485|AC131485.1 Lytechinus variegatus clone Lv183H12, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    34  0.12  6
AC107456|AC107456.5 Mus musculus clone RP23-273L6, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.    40  0.13  7
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115581_9(AC115581|pid:none) Dictyostelium discoideum chromosom...   416   e-115
BC077988_1(BC077988|pid:none) Xenopus laevis achalasia, adrenoco...    80   8e-14
BC067671_1(BC067671|pid:none) Danio rerio achalasia, adrenocorti...    68   2e-10
AK088247_1(AK088247|pid:none) Mus musculus 2 days neonate thymus...    68   3e-10
AY891872_1(AY891872|pid:none) Synthetic construct Homo sapiens c...    65   2e-09
AK222509_1(AK222509|pid:none) Homo sapiens mRNA for achalasia, a...    65   2e-09
(Q9NRG9) RecName: Full=Aladin; AltName: Full=Adracalin;  &AF2260...    65   2e-09
AK000833_1(AK000833|pid:none) Homo sapiens cDNA FLJ20826 fis, cl...    65   3e-09
BC120418_1(BC120418|pid:none) Bos taurus achalasia, adrenocortic...    63   7e-09
AK087134_1(AK087134|pid:none) Mus musculus 0 day neonate lung cD...    60   5e-08
protein update 2009. 7. 9
PSORT 

 psg: 0.83  gvh: 0.35  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: cytoskeletal
	 20.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SSK827 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK827E
Full length Seq. 
>SSK827E.Seq
GTACCAACATTCATACCACGTTATAATGGTAACTCATTATTAGTTTGGTCTCCAAAAAAT
GATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGAATTTTCGATATCTCAAAATGGGAT
TACAATAATAAAGAATGGCCAATGTTAACAAATTATCAAACAGGATCATGGAATGGAAAA
GGTGAATATTTAGCAGTTGCAAGTGGTGATAGAATTCAGTTTATTCAATGTATAAATAGA
GCATTTGAATCAGGTGGTGAATTAATGTATGTTGAGAAAACTTCAACCTATAGATTACAA
AATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGTGAATTATTTTTAGGCGGACATATA
AAGAAAATTGCATGGTCACCTGATAGTCAAAGATTGGCTGTCATCTTTTATTTAAATAGC
AAGAGTAGAAATAATGATACTTATTGTGCAATCTATAAAATTAAAACTTATCCTAAATTT
TCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTT
GTCCCAAATTATAAAAAAGGTTCTTTATTATCAATTGCCTACAATGATGGAACAATTAAA
TTTTTCCCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACACTTTATTAT
CATTATATTATTAAAAAAAAAAAA
Length of full length seq. 684