SSK819
Library SS
(Link to library)
Clone ID SSK819
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13985-1
Original site URL
Representative seq. ID SSK819E
(Link to Original site)
Representative DNA sequence
>SSK819 (SSK819Q) /CSM/SS/SSK8-A/SSK819Q.Seq.d/
CAAATTTATATTATCTTTTTTTTTTAATATTACATTTATTATTATTATTTTTTTGTATCA
TATATTATTTTAATATCTGTGATAATTTATATATATATTTAGTTTCATAATAAATTCTAT
TCATTTTTTAAATATAAAAAAAAAAAATAAAAAAAAAAAAAATAATATGGTTAGGTTTGT
ACCATGGAATGTTCCATTATATAGAAGGTTAGAAACTATGGCAGTTGCAATTTATGCAAT
GGTATTACCAGTATGTTTAATAATGGCATTCAATTTAATAGTGATACCATTGTTTTGGGG
TATTGCAATACCTTATTTAGTTTGGATGTTTTATTTCGATACAAAACATGAAAGTGGTGG
TAGACGTGTAAGTTTAGTTAGAAATTCAATACTGTGGCGTTACTTTAGAGATTATTTCCC
AATCTCTTTAATTATCAATTCAAATTATGATCCAAAAAAGAATTACATCTTTGCCTATCA
TCCACATGGTATCATTAGTATTGGTGCTTTTTGTAATTTCGCTACAAATGCTAATAATAT
TGACGAAAAATTACCTGGTTTAAAAGTACATTTATTAACATTAGAATCAAATTTTAAAAT
ACCATTTTTAAGAGATGTTTTAATGAGTTTTGGTATGTCATCAGTTTCAAAGAAAAGTTG
TGAAAATATTTTAAATTCAGGAGCTGGTGAATCAATTTGTTTGGTAGTTGGTGGAGCAGA
GGAATCACTAGACGCCCGTCCTGGGCTTAATGAAATTACATTGAAAAAGAGAAAAGGTTT
CATTAAATTAGCATTGGTAAATGGTGCATCATTAGTACCAGTTTATTCATTTGGTGAAAA
TGATATCTATGATCAAGTACCAAATCCACGTGGTTCATTAGTTAGAAAGATTCAAACTAA
AATCAAAGATCTAACTGGTATCGCACCACCATTATTCATGGGTAGAGGAATTTTTAATTA
TGATTTTGGTTTATTACCAGTTAGACATAAAATCGTTACTGTTGTTGGCGAACCAATTGA
TATACCAAAGATTAAATCACCTACTGATCAAGTTATTGAACATTATCATCAAATTTATGT
TGAAGCACTTCAAAATTTATTTGACAAACACAAAAATTCTTGTGCTGATAAAGAAACTGG
AAATTTAAAAATAAATTAAATTAATTTAAAAATTTGTAATAT
sequence update 2002. 8. 2
Translated Amino Acid sequence
kfilsfffnitfiiiiflyhilf*yl**FIYIFSFIINSIHFLNIKKKNKKKKNNMVRFV
PWNVPLYRRLETMAVAIYAMVLPVCLIMAFNLIVIPLFWGIAIPYLVWMFYFDTKHESGG
RRVSLVRNSILWRYFRDYFPISLIINSNYDPKKNYIFAYHPHGIISIGAFCNFATNANNI
DEKLPGLKVHLLTLESNFKIPFLRDVLMSFGMSSVSKKSCENILNSGAGESICLVVGGAE
ESLDARPGLNEITLKKRKGFIKLALVNGASLVPVYSFGENDIYDQVPNPRGSLVRKIQTK
IKDLTGIAPPLFMGRGIFNYDFGLLPVRHKIVTVVGEPIDIPKIKSPTDQVIEHYHQIYV
EALQNLFDKHKNSCADKETGNLKIN*inlkicn


Translated Amino Acid sequence (All Frames)
Frame A:
qiyiifff*yyiyyyyffvsyiilisviiyiyi*fhnkfysffkykkkk*kkkk*yg*vc
tmecsii*kvrnygscnlcngitsmfnngiqfnsdtivlgycntlfsldvlfrykt*kww
*tckfs*kfntvall*rlfpnlfnyqfkl*skkelhlclsstwyh*ywcfl*frykc**y
*rkitwfkstfinirikf*ntifkrcfnefwyvisfkekl*kyfkfrsw*inlfgswwsr
gitrrpswa**nyiekekrfh*isigkwciistslfiw*k*yl*sstkstwfis*kdsn*
nqrsnwyrttiihg*rnf*l*fwfits*t*nryccwrtn*ytkd*ity*ssy*tlssnlc
*stskfi*qtqkflc**rnwkfknkln*fknl*y


Frame B:
kfilsfffnitfiiiiflyhilf*yl**FIYIFSFIINSIHFLNIKKKNKKKKNNMVRFV
PWNVPLYRRLETMAVAIYAMVLPVCLIMAFNLIVIPLFWGIAIPYLVWMFYFDTKHESGG
RRVSLVRNSILWRYFRDYFPISLIINSNYDPKKNYIFAYHPHGIISIGAFCNFATNANNI
DEKLPGLKVHLLTLESNFKIPFLRDVLMSFGMSSVSKKSCENILNSGAGESICLVVGGAE
ESLDARPGLNEITLKKRKGFIKLALVNGASLVPVYSFGENDIYDQVPNPRGSLVRKIQTK
IKDLTGIAPPLFMGRGIFNYDFGLLPVRHKIVTVVGEPIDIPKIKSPTDQVIEHYHQIYV
EALQNLFDKHKNSCADKETGNLKIN*inlkicn


Frame C:
nlyylfflilhllllffciiyyfnicdnlyiylvs**ilfif*i*kkkikkkkiiwlgly
hgmfhyieg*klwqlqfmqwyyqyv**whsi***yhcfgvlqyli*fgcfisiqnmkvvv
dv*v*leiqycgvtleiisqsl*lsiqimiqkritslpiihmvslvlvlfvislqmliil
tknylv*kyiy*h*nqilkyhf*emf**vlvchqfqrkvvkif*iqelvnqfvw*lveqr
nh*tpvlglmklh*krekvsln*hw*mvhh*yqfihlvkmismikyqihvvh*lerfklk
ski*lvshhhyswveeflimilvyyqldiksllllanqliyqrlnhllikllniiikfml
khfkiyltntkilvlikklei*k*ikli*kfvi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK819 (SSK819Q) /CSM/SS/SSK8-A/SSK819Q.Seq.d/ 1939 0.0
VFN116 (VFN116Q) /CSM/VF/VFN1-A/VFN116Q.Seq.d/ 1398 0.0
VFM760 (VFM760Q) /CSM/VF/VFM7-C/VFM760Q.Seq.d/ 1390 0.0
AFO140 (AFO140Q) /CSM/AF/AFO1-B/AFO140Q.Seq.d/ 1372 0.0
CFG374 (CFG374Q) /CSM/CF/CFG3-D/CFG374Q.Seq.d/ 1269 0.0
SHJ562 (SHJ562Q) /CSM/SH/SHJ5-C/SHJ562Q.Seq.d/ 38 0.30
SHE327 (SHE327Q) /CSM/SH/SHE3-B/SHE327Q.Seq.d/ 38 0.30
SHE123 (SHE123Q) /CSM/SH/SHE1-A/SHE123Q.Seq.d/ 38 0.30
SHD570 (SHD570Q) /CSM/SH/SHD5-C/SHD570Q.Seq.d/ 38 0.30
SHA827 (SHA827Q) /CSM/SH/SHA8-B/SHA827Q.Seq.d/ 38 0.30

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 38 2e-04 22
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.001 18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 28 0.004 22
AP003363|AP003363.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 6/9. 32 0.011 14
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 32 0.012 16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 0.019 16
AC078905|AC078905.5 Homo sapiens chromosome 15, clone RP11-138H10, complete sequence. 34 0.023 8
AP005514|AP005514.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24. 36 0.029 8
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 0.034 13
AC003983|AC003983.1 Human PAC clone RP1-93I3 from Xq23, complete sequence. 48 0.047 7
dna update 2003.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GC1) RecName: Full=Diacylglycerol O-acyltransferase; ... 672 0.0
(Q96UY1) RecName: Full=Diacylglycerol O-acyltransferase 2B; ... 342 1e-92
AE017346_56(AE017346|pid:none) Cryptococcus neoformans var. neof... 337 6e-91
(Q70VZ7) RecName: Full=2-acylglycerol O-acyltransferase 1; ... 299 1e-79
BC103877_1(BC103877|pid:none) Homo sapiens monoacylglycerol O-ac... 294 4e-78
(Q3SYC2) RecName: Full=2-acylglycerol O-acyltransferase 2; ... 293 8e-78
AB073384_1(AB073384|pid:none) Homo sapiens infant liver cDNA, cl... 293 8e-78
(Q3KPP4) RecName: Full=2-acylglycerol O-acyltransferase 1; ... 293 1e-77
BT081690_1(BT081690|pid:none) Rana catesbeiana clone rcat-evr-52... 291 3e-77
BC158509_1(BC158509|pid:none) Xenopus tropicalis hypothetical pr... 291 4e-77
protein update 2009. 7. 9
PSORT

psg: 0.97 gvh: 0.50 alm: 0.19 top: 0.57 tms: 0.07 mit: 0.38 mip: 0.08
nuc: 0.08 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSK819 is cyt

5' end seq. ID SSK819F
5' end seq.
>SSK819F.Seq
CAAATTTATATTATCTTTTTTTTTTAATATTACATTTATTATTATTATTTTTTTGTATCA
TATATTATTTTAATATCTGTGATAATTTATATATATATTTAGTTTCATAATAAATTCTAT
TCATTTTTTAAATATAAAAAAAAAAAATAAAA----------
Length of 5' end seq. 152
3' end seq. ID SSK819Z
3' end seq.
>SSK819Z.Seq
NNNNNNNNNNAAAGGGAACAAAAGCTGGGTACCGGGCCCCCCCTCGAGGTCGACCCACGC
GTCCGCAAATTTATATTATCTTTTTTTTTTAATATTACATTTATTATTATTATTTTTTTG
TATCATATATTATTTTAATATCTGTGATAATTTATATATATATTTAGTTTCATAATAAAT
TCTATTCATTTTTTAAATATAAAAAAAAAAAATAAAAAAAAAAAAAATAATATGGTTAGG
TTTGTACCATGGAATGTTCCATTATATAGAAGGTTAGAAACTATGGCAGTTGCAATTTAT
GCAATGGTATTACCAGTATGTTTAATAATGGCATTCAATTTAATAGTGATACCATTGTTT
TGGGGTATTGCAATACCTTATTTAGTTTGGATGTTTTATTTCGATACAAAACATGAAAGT
GGTGGTAGACGTGTAAGTTTAGTTAGAAATTCAATACTGTGGCGTTACTTTAGAGATTAT
TTCCCAATCTCTTTAATTATCAATTCAAATTATGATCCAAAAAAGAATTACATCTTTGCC
TATCATCCACATGGTATCATTAGTATTGGTGCTTTTTGTAATTTCGCTACAAATGCTAAT
AATATTGACGAAAAATTACCTGGTTTAAAAGTACATTTATTAACATTAGAATCAAATTTT
AAAATACCATTTTTAAGAGATGTTTTAATGAGTTTTGGTATGTCATCAGTTTCAAAGAAA
AGTTGTGAAAATATTTTAAATTCAGGAGCTGGTGAATCAATTTGTTTGGTAGTTGGTGGA
GCAGAGGAATCACTAGACGCCCGTCCTGGGCTTAATGAAATTACATTGAAAAAGAGAAAA
GGTTTCATTAAATTAGCATTGGTAAATGGTGCATCATTAGTACCAGTTTATTCATTTGGT
GAAAATGATATCTATGATCAAGTACCAAATCCACGTGGTTCATTAGTTAGAAAGATTCAA
ACTAAAATCAAAGATCTAACTGGTATCGCACCACCATTATTCATGGGTAGAGGAATTTTT
AATTATGATTTTGGTTTATTACCAGTTAGACATAAAATCGTTACTGTTGTTGGCGAACCA
ATTGATATACCAAAGATTAAATCACCTACTGATCAAGTTATTGAACATTATCATCAAATT
TATGTTGAAGCACTTCAAAATTTATTTGACAAACACAAAAATTCTTGTGCTGATAAAGAA
ACTGGAAATTTAAAAATAAATTAAATTAATTTAAAAATTTGTAATAT
Length of 3' end seq. 1247
Connected seq. ID SSK819P
Connected seq.
>SSK819P.Seq
CAAATTTATATTATCTTTTTTTTTTAATATTACATTTATTATTATTATTTTTTTGTATCA
TATATTATTTTAATATCTGTGATAATTTATATATATATTTAGTTTCATAATAAATTCTAT
TCATTTTTTAAATATAAAAAAAAAAAATAAAA----------AAAGGGAACAAAAGCTGG
GTACCGGGCCCCCCCTCGAGGTCGACCCACGCGTCCGCAAATTTATATTATCTTTTTTTT
TTAATATTACATTTATTATTATTATTTTTTTGTATCATATATTATTTTAATATCTGTGAT
AATTTATATATATATTTAGTTTCATAATAAATTCTATTCATTTTTTAAATATAAAAAAAA
AAAATAAAAAAAAAAAAAATAATATGGTTAGGTTTGTACCATGGAATGTTCCATTATATA
GAAGGTTAGAAACTATGGCAGTTGCAATTTATGCAATGGTATTACCAGTATGTTTAATAA
TGGCATTCAATTTAATAGTGATACCATTGTTTTGGGGTATTGCAATACCTTATTTAGTTT
GGATGTTTTATTTCGATACAAAACATGAAAGTGGTGGTAGACGTGTAAGTTTAGTTAGAA
ATTCAATACTGTGGCGTTACTTTAGAGATTATTTCCCAATCTCTTTAATTATCAATTCAA
ATTATGATCCAAAAAAGAATTACATCTTTGCCTATCATCCACATGGTATCATTAGTATTG
GTGCTTTTTGTAATTTCGCTACAAATGCTAATAATATTGACGAAAAATTACCTGGTTTAA
AAGTACATTTATTAACATTAGAATCAAATTTTAAAATACCATTTTTAAGAGATGTTTTAA
TGAGTTTTGGTATGTCATCAGTTTCAAAGAAAAGTTGTGAAAATATTTTAAATTCAGGAG
CTGGTGAATCAATTTGTTTGGTAGTTGGTGGAGCAGAGGAATCACTAGACGCCCGTCCTG
GGCTTAATGAAATTACATTGAAAAAGAGAAAAGGTTTCATTAAATTAGCATTGGTAAATG
GTGCATCATTAGTACCAGTTTATTCATTTGGTGAAAATGATATCTATGATCAAGTACCAA
ATCCACGTGGTTCATTAGTTAGAAAGATTCAAACTAAAATCAAAGATCTAACTGGTATCG
CACCACCATTATTCATGGGTAGAGGAATTTTTAATTATGATTTTGGTTTATTACCAGTTA
GACATAAAATCGTTACTGTTGTTGGCGAACCAATTGATATACCAAAGATTAAATCACCTA
CTGATCAAGTTATTGAACATTATCATCAAATTTATGTTGAAGCACTTCAAAATTTATTTG
ACAAACACAAAAATTCTTGTGCTGATAAAGAAACTGGAAATTTAAAAATAAATTAAATTA
ATTTAAAAATTTGTAATAT
Length of connected seq. 1389
Full length Seq ID SSK819E
Full length Seq.
>SSK819E.Seq
CAAATTTATATTATCTTTTTTTTTTAATATTACATTTATTATTATTATTTTTTTGTATCA
TATATTATTTTAATATCTGTGATAATTTATATATATATTTAGTTTCATAATAAATTCTAT
TCATTTTTTAAATATAAAAAAAAAAAATAAAAAAAAAAAAAATAATATGGTTAGGTTTGT
ACCATGGAATGTTCCATTATATAGAAGGTTAGAAACTATGGCAGTTGCAATTTATGCAAT
GGTATTACCAGTATGTTTAATAATGGCATTCAATTTAATAGTGATACCATTGTTTTGGGG
TATTGCAATACCTTATTTAGTTTGGATGTTTTATTTCGATACAAAACATGAAAGTGGTGG
TAGACGTGTAAGTTTAGTTAGAAATTCAATACTGTGGCGTTACTTTAGAGATTATTTCCC
AATCTCTTTAATTATCAATTCAAATTATGATCCAAAAAAGAATTACATCTTTGCCTATCA
TCCACATGGTATCATTAGTATTGGTGCTTTTTGTAATTTCGCTACAAATGCTAATAATAT
TGACGAAAAATTACCTGGTTTAAAAGTACATTTATTAACATTAGAATCAAATTTTAAAAT
ACCATTTTTAAGAGATGTTTTAATGAGTTTTGGTATGTCATCAGTTTCAAAGAAAAGTTG
TGAAAATATTTTAAATTCAGGAGCTGGTGAATCAATTTGTTTGGTAGTTGGTGGAGCAGA
GGAATCACTAGACGCCCGTCCTGGGCTTAATGAAATTACATTGAAAAAGAGAAAAGGTTT
CATTAAATTAGCATTGGTAAATGGTGCATCATTAGTACCAGTTTATTCATTTGGTGAAAA
TGATATCTATGATCAAGTACCAAATCCACGTGGTTCATTAGTTAGAAAGATTCAAACTAA
AATCAAAGATCTAACTGGTATCGCACCACCATTATTCATGGGTAGAGGAATTTTTAATTA
TGATTTTGGTTTATTACCAGTTAGACATAAAATCGTTACTGTTGTTGGCGAACCAATTGA
TATACCAAAGATTAAATCACCTACTGATCAAGTTATTGAACATTATCATCAAATTTATGT
TGAAGCACTTCAAAATTTATTTGACAAACACAAAAATTCTTGTGCTGATAAAGAAACTGG
AAATTTAAAAATAAATTAAATTAATTTAAAAATTTGTAATAT
Length of full length seq. 1182