SSK787
Library SS
(Link to library)
Clone ID SSK787
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13202-1
Original site URL
Representative seq. ID SSK787Z
(Link to Original site)
Representative DNA sequence
>SSK787 (SSK787Q) /CSM/SS/SSK7-D/SSK787Q.Seq.d/
XXXXXXXXXXATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGG
TGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAG
TTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTT
CTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATAC
AATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATG
TACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGC
TAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCC
AGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGT
CCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTT
AAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGG
AACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCTGGTTTACC
ATAAATAAAAATAAGTTTTAAACATTTTGTAATTTTAAAAAA
sequence update 1998. 3. 1
Translated Amino Acid sequence
---SQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFS
AWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAK
IYSFDSDEAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLN
GVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVAGLP*ikisfkhfvilk


Translated Amino Acid sequence (All Frames)
Frame A:
---lvrfkikqdvvlvgllvlqnqllivyvftimkmfn*vlwiwllvmklitvvkvvmps
lhgig*eskvlyqknvfhiqfqlvhqlnnhv*ilstlhhvlksvnqipl*filktnikwl
kfilstlmkqsckklllmvqsklvslslkislltnlvftstqlvki*vvtvlnslvsvp*
mvlitmplttngqlhgvimels*snvviavslmtlllvyhk*k*vlnil*f*k


Frame B:
---*sdsksskmwfllgfwcyrisy*sfmysq**kcsikfygygyl**n**rl*rw*cll
cmelvkkarccirrmssiynsnlstssttmfkfcqhsimy*rvsikflfnlfsrqt*ng*
nlffrl**snharncy*wssrslfhcl*rfpclqiwclrphnw*rfrwslc*trwfrylk
wc*llcr*qpmdnfmg**wnflnqtw*lryl**rccwftinknkf*tfcnfkk


Frame C:
---SQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFS
AWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAK
IYSFDSDEAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLN
GVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVAGLP*ikisfkhfvilk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK787 (SSK787Q) /CSM/SS/SSK7-D/SSK787Q.Seq.d/ 1372 0.0
SSK654 (SSK654Q) /CSM/SS/SSK6-C/SSK654Q.Seq.d/ 1364 0.0
SSK863 (SSK863Q) /CSM/SS/SSK8-C/SSK863Q.Seq.d/ 1362 0.0
SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/ 1362 0.0
SSD418 (SSD418Q) /CSM/SS/SSD4-A/SSD418Q.Seq.d/ 1358 0.0
SSE709 (SSE709Q) /CSM/SS/SSE7-A/SSE709Q.Seq.d/ 1342 0.0
VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/ 1328 0.0
SFK635 (SFK635Q) /CSM/SF/SFK6-B/SFK635Q.Seq.d/ 1326 0.0
VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/ 1314 0.0
VFB609 (VFB609Q) /CSM/VF/VFB6-A/VFB609Q.Seq.d/ 1308 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG132206|BG132206.1 EST465098 tomato crown gall Lycopersicon esculentum cDNA clone cTOE6F18 5' sequence, mRNA sequence. 54 4e-05 2
BE473010|BE473010.1 EST417863 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA35F24, mRNA sequence. 54 0.002 1
BE450897|BE450897.1 EST401784 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY15H11, mRNA sequence. 54 0.002 1
AF359422|AF359422.1 Nicotiana tabacum cathepsin B-like cysteine proteinase gene, partial cds. 54 0.002 1
BI421286|BI421286.1 EST531952 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC66O18 5' end, mRNA sequence. 54 0.002 1
BF098253|BF098253.1 EST428862 tomato nutrient deficient roots Lycopersicon esculentum cDNA clone cLEW26B5 5' sequence, mRNA sequence. 54 0.002 1
AW650123|AW650123.1 EST328577 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI12C1 5', mRNA sequence. 54 0.002 1
CB610617|CB610617.1 ALBEDO0003_IIaF_D04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D04 5', mRNA sequence. 54 0.002 1
BE462046|BE462046.1 EST413384 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG40P1, mRNA sequence. 54 0.002 1
CB292488|CB292488.1 UCRCS01_04cd07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence. 54 0.002 1
dna update 2003. 8. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QD9) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 466 e-130
BC072490_1(BC072490|pid:none) Rattus norvegicus cathepsin B, mRN... 218 1e-55
(P00787) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 218 1e-55
M11305_1(M11305|pid:none) Rat cathepsin B mRNA, 3' end. 218 1e-55
AC149038_4(AC149038|pid:none) Medicago truncatula chromosome 7 c... 214 3e-54
EU532428_1(EU532428|pid:none) Sus scrofa cathepsin B (CTSB) gene... 213 3e-54
(P07688) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 213 3e-54
(A1E295) RecName: Full=Cathepsin B; EC=3.4.22.1; Contai... 213 3e-54
BC115254_1(BC115254|pid:none) Danio rerio capthepsin B, b, mRNA ... 212 8e-54
M14222_1(M14222|pid:none) Mouse cathepsin B proteinase mRNA, com... 211 2e-53
protein update 2009. 6.14
PSORT

psg: 0.90 gvh: 0.46 alm: 0.46 top: 0.47 tms: 0.00 mit: 0.31 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSK787 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSK787Z
3' end seq.
>SSK787Z.Seq
----------ATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGG
TGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAG
TTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTT
CTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATAC
AATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATG
TACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGC
TAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCC
AGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGT
CCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTT
AAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGG
AACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCTGGTTTACC
ATAAATAAAAATAAGTTTTAAACATTTTGTAATTTTAAAAAA
Length of 3' end seq. 692
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -