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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK783
Library SS
(Link to library)
Clone ID SSK783
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05712-1
Original site URL
Representative seq. ID SSK783E
(Link to Original site)
Representative DNA sequence 
>SSK783 (SSK783Q) /CSM/SS/SSK7-D/SSK783Q.Seq.d/
AAACAAATAAAATAATATTATATTATAAAATTTTAGAATCTATAAACATATAAAAAAAAA
AAAAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAAACTCAACAACAAGTTGATGA
TGTTACAAATACCATGCACATTGCAGTTGGTAAAATGTTAGATAATCAACAAAAAGTTTC
AGAATTAACAGATAAGAGTGAAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGAC
TAATGAAATCAAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGC
AGTAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAATTTACATAAAT
CAATTTAAAAAAAGGAAAAACAACATTAATATATATATTTCAGAATTCAAAAAATTAAAA
AAAAAAAAAAAAGTTATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAA
AGAAACAAATAATAACNNNNNNNAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAA
AGAAACAAATAATANCTAGTAGCAAATAATAAATAATAATAATAAATAACAAATAATACA
ATATAAATTCATTTTTTATATACAGTGCAAACTATAGTATTTAAACAATAGCACACAAAT
ATATATATTTGTAAATATAATAACCCAATATCAAAAAAAAAAAAACAAAAATAAAAAAAA
AAAAGAAAAAAAAAAAAAAAAAAGAAAATAAAATCAAATATGTCATTATTTATAGACTTA
TATAAAA
sequence update 1999. 6.14
Translated Amino Acid sequence 
nk*nniil*NFRIYKHIKKKKKKMSEPVNKVKQTQQQVDDVTNTMHIAVGKMLDNQQKVS
ELTDKSENMKQGAQQFKKKTNEIKRLMWCRNIKLTLIIIAVVVLLLVVIIVPIVLKFT*i
nlkkgkttliyifqnskn*kkkkkl*lkiink***pkkkketnnnxxxiink***pkkkk
etnnx**qiinnnnk*qiiqykfifyiqckl*ylnnstqiyifvniitqyqkkknknkkk
kekkkkkrk*nqichyl*tyik
Translated Amino Acid sequence (All Frames) 
Frame A:
kqik*yyiikf*nl*tykkkkkknvrts**sktnstts**cykyhahcsw*nvr*stksf
rinr*e*kyetrcstiqked**nqtfnvv*kyktysyhycsscaligcyyctncsqiyin
qfkkrknniniyisefkklkkkkkvitqnnk*viitkkkkrnk**xxxnnk*viitkkkk
rnk*xlvannk****itnnti*ihflytvqtivfkq*htniyickynnpiskkkkqk*kk
krkkkkkkkiksnmslfidlyk


Frame B:
nk*nniil*NFRIYKHIKKKKKKMSEPVNKVKQTQQQVDDVTNTMHIAVGKMLDNQQKVS
ELTDKSENMKQGAQQFKKKTNEIKRLMWCRNIKLTLIIIAVVVLLLVVIIVPIVLKFT*i
nlkkgkttliyifqnskn*kkkkkl*lkiink***pkkkketnnnxxxiink***pkkkk
etnnx**qiinnnnk*qiiqykfifyiqckl*ylnnstqiyifvniitqyqkkknknkkk
kekkkkkrk*nqichyl*tyik


Frame C:
tnkiilyykilesini*kkkkkkcqnqlik*nklnnklmmlqipctlqlvkc*iinkkfq
n*qirvki*nkvlnnskrrlmksnv*cgvei*nlllsllq*lcsywllllyqlfsnlhks
i*kkekqh*yiyfriqkikkkkksynsk**isnnnqkkkkkqiitxxk**isnnnqkkkk
kqiixssk**iiiinnk*yninsffiysanysi*tiahkyiyl*i**pnikkkktkikkk
kkkkkkkenkikyviiyrli*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM735 (SSM735Q) /CSM/SS/SSM7-B/SSM735Q.Seq.d/                        585   e-166
SSM718 (SSM718Q) /CSM/SS/SSM7-A/SSM718Q.Seq.d/                        585   e-166
SSM361 (SSM361Q) /CSM/SS/SSM3-C/SSM361Q.Seq.d/                        585   e-166
SSK783 (SSK783Q) /CSM/SS/SSK7-D/SSK783Q.Seq.d/                        585   e-166
SSK419 (SSK419Q) /CSM/SS/SSK4-A/SSK419Q.Seq.d/                        585   e-166
SSH266 (SSH266Q) /CSM/SS/SSH2-C/SSH266Q.Seq.d/                        585   e-166
SSC615 (SSC615Q) /CSM/SS/SSC6-A/SSC615Q.Seq.d/                        585   e-166
SSJ122 (SSJ122Q) /CSM/SS/SSJ1-A/SSJ122Q.Seq.d/                        561   e-159
SSH785 (SSH785Q) /CSM/SS/SSH7-D/SSH785Q.Seq.d/                        531   e-150
SSB132 (SSB132Q) /CSM/SS/SSB1-B/SSB132Q.Seq.d/                        428   e-119
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34  7e-04  10
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    38  8e-04  11
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          38  0.002  8
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38  0.002  8
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    38  0.002  6
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36  0.004  10
U32857|U32857.1 Saccharomyces cerevisiae VAR1 gene, mitochondrial gene encoding mitochondrial protein, 3' processing site, partial sequence.    38  0.004  4
BH552475|BH552475.1 BOGLV82TF BOGL Brassica oleracea genomic clone BOGLV82, DNA sequence.    36  0.006  3
AE001421|AE001421.2 Plasmodium falciparum 3D7 chromosome 2 section 58 of 73 of the complete sequence.    38  0.007  5
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    36  0.008  10
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GB3) RecName: Full=Synaptobrevin-B;                                53   1e-05
AK343051_1(AK343051|pid:none) Acyrthosiphon pisum ACYPI007508 mR...    47   7e-04
AK340105_1(AK340105|pid:none) Acyrthosiphon pisum ACYPI005630 mR...    47   0.001
AF484091_1(AF484091|pid:none) Lymnaea stagnalis synaptobrevin is...    46   0.001
AE013599_1084(AE013599|pid:none) Drosophila melanogaster chromos...    45   0.002
AE013599_1083(AE013599|pid:none) Drosophila melanogaster chromos...    45   0.002
AB077367_1(AB077367|pid:none) Halocynthia roretzi HrCellubrevin ...    45   0.003
(Q60WU2) RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobre...    44   0.005
AE014296_328(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.005
AE014296_330(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.005
protein update 2009. 7. 9
PSORT 

 psg: 0.46  gvh: 0.18  alm: 0.01  top: 0.33  tms: 0.07  mit: 0.34  mip: 0.02
 nuc: 0.24  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: Golgi
	 12.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSK783 is mit
5' end seq. ID SSK783F
5' end seq. 
>SSK783F.Seq
AAACAAATAAAATAATATTATATTATAAAATTTTAGAATCTATAAACATATAAAAAAAAA
AAAAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAAACTCAACAACAAGTTGATGA
TGTTACAAATACCATGCACATTGCAGTTGGTAAAATGTTAGATAATCAACAAAAAGTTTC
AGAATTAACAGATAAGAGTGAAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGAC
TAATGAAATCAAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGC
AGTAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAATTTACATAAAT
CAATTTAAAAAAAGGAAAAACAACATTAATATATATATTTCAGAATTCAAAAAATTAAAA
AAAAAAAAAAAAGTTATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAA
AGAAACAAATAATAACTAGTAGCAAATAATAAAT----------
Length of 5' end seq. 514
3' end seq. ID SSK783Z
3' end seq. 
>SSK783Z.Seq
----------TAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAAAGAAAC
AAATAATANCTAGTAGCAAATAATAAATAATAATAATAAATAACAAATAATACAATATAA
ATTCATTTTTTATATACAGTGCAAACTATAGTATTTAAACAATAGCACACAAATATATAT
ATTTGTAAATATAATAACCCAATATCAAAAAAAAAAAAACAAAAATAAAAAAAAAAAAGA
AAAAAAAAAAAAAAAAAGAAAATAAAATCAAATATGTCATTATTTATAGACTTATATAAA
A
Length of 3' end seq. 291
Connected seq. ID SSK783P
Connected seq. 
>SSK783P.Seq
AAACAAATAAAATAATATTATATTATAAAATTTTAGAATCTATAAACATATAAAAAAAAA
AAAAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAAACTCAACAACAAGTTGATGA
TGTTACAAATACCATGCACATTGCAGTTGGTAAAATGTTAGATAATCAACAAAAAGTTTC
AGAATTAACAGATAAGAGTGAAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGAC
TAATGAAATCAAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGC
AGTAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAATTTACATAAAT
CAATTTAAAAAAAGGAAAAACAACATTAATATATATATTTCAGAATTCAAAAAATTAAAA
AAAAAAAAAAAAGTTATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAA
AGAAACAAATAATAACTAGTAGCAAATAATAAAT----------TAACTCAAAATAATAA
ATAAGTAATAATAACCAAAAAAAAAAAAAGAAACAAATAATANCTAGTAGCAAATAATAA
ATAATAATAATAAATAACAAATAATACAATATAAATTCATTTTTTATATACAGTGCAAAC
TATAGTATTTAAACAATAGCACACAAATATATATATTTGTAAATATAATAACCCAATATC
AAAAAAAAAAAAACAAAAATAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAAATAAA
ATCAAATATGTCATTATTTATAGACTTATATAAAA
Length of connected seq. 805
Full length Seq ID SSK783E
Full length Seq. 
>SSK783E.Seq
AAACAAATAAAATAATATTATATTATAAAATTTTAGAATCTATAAACATATAAAAAAAAA
AAAAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAAACTCAACAACAAGTTGATGA
TGTTACAAATACCATGCACATTGCAGTTGGTAAAATGTTAGATAATCAACAAAAAGTTTC
AGAATTAACAGATAAGAGTGAAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGAC
TAATGAAATCAAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGC
AGTAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAATTTACATAAAT
CAATTTAAAAAAAGGAAAAACAACATTAATATATATATTTCAGAATTCAAAAAATTAAAA
AAAAAAAAAAAAGTTATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAA
AGAAACAAATAATAACNNNNNNNAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAA
AGAAACAAATAATANCTAGTAGCAAATAATAAATAATAATAATAAATAACAAATAATACA
ATATAAATTCATTTTTTATATACAGTGCAAACTATAGTATTTAAACAATAGCACACAAAT
ATATATATTTGTAAATATAATAACCCAATATCAAAAAAAAAAAAACAAAAATAAAAAAAA
AAAAGAAAAAAAAAAAAAAAAAAGAAAATAAAATCAAATATGTCATTATTTATAGACTTA
TATAAAA
Length of full length seq. 787