>SSK757 (SSK757Q) /CSM/SS/SSK7-C/SSK757Q.Seq.d/
XXXXXXXXXXTACAATGTACCACACTTTGATTTGAAGCATAAAATTGAAGAGGAGCTAAG
AAAAATGTCTAAAGAAAATCCAAGTTTTGTAACTTCCTTTGTTTACGCTCCATTTTATAT
GCAAAATTTTAAAACTTTCTTTGCACCAAAACGTACTGTCAACGAAGCCACTCAAGAAGT
CACATATGTATTGGGCATGCCATTGAATCCTAAAATGTTGCCATTGGATATGGGCGATAT
TAATGATATCGGTTCAATCGTTGCTGTAATGATGAAAGATCCAACTAAATACTCTGGTAA
AATCATTCCATTCTCAGGTGACTGTTTACATGGTGAAAAGATCGCTGAAATTATGTCAAA
AGTAACTGGTAAGAAAGTTGTTTACAATTTCATTGAACCAAAAGATTTTGCTCAATTCGA
TTTCCCAGGTGCTGGTGAAATGGCTGAAATGTTTTCTTATTACAATGAATTTGGTGCATT
TGATAAATTAGATAAAACTGAAGCTTCAAAAATTACAAAATTAACAAATCTTGAAGAATT
TTTGAAAAAAACTAATTTTCAACTTGAATAGTTAAATATGCCATATTTATTTTAAACTTA
TTTTAATATACAAATAAATAATTAAAATAAATAATTTAAAGTTTTTGGTAAAAAA

---NVPHFDLKHKIEEELRKMSKENPSFVTSFVYAPFYMQNFKTFFAPKRTVNEATQEVT
YVLGMPLNPKMLPLDMGDINDIGSIVAVMMKDPTKYSGKIIPFSGDCLHGEKIAEIMSKV
TGKKVVYNFIEPKDFAQFDFPGAGEMAEMFSYYNEFGAFDKLDKTEASKITKLTNLEEFL
KKTNFQLE*lnmpylf*tyfniqinn*nk*fkvfgkk

Frame A:
---tmyhtli*siklkrs*ekclkkiqvl*lplftlhfickilklslhqnvlstkplkks
hmywach*ilkcchwiwailmisvqsll***kiqlntlvksfhsqvtvymvkrslklcqk
*lvrklftislnqkillnsisqvlvkwlkcflitmnlvhlin*iklklqklqn*qilknf
*kklifnlns*ichiyfkliliyk*iikinnlkflvk


Frame B:
---qcttl*fea*n*rgakknv*rkskfcnflclrsilyakf*nflctktycqrshsrsh
icighaies*nvaigygry**yrfnrccndersn*ilw*nhsilr*lftw*kdr*nyvks
nw*esclqfh*tkrfcsirfprcw*ng*nvfllq*iwci**ir*n*sfknykinks*rif
ekn*fst*ivkyaifilnlf*ytnk*lk*ii*sfw*k


Frame C:
---NVPHFDLKHKIEEELRKMSKENPSFVTSFVYAPFYMQNFKTFFAPKRTVNEATQEVT
YVLGMPLNPKMLPLDMGDINDIGSIVAVMMKDPTKYSGKIIPFSGDCLHGEKIAEIMSKV
TGKKVVYNFIEPKDFAQFDFPGAGEMAEMFSYYNEFGAFDKLDKTEASKITKLTNLEEFL
KKTNFQLE*lnmpylf*tyfniqinn*nk*fkvfgkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK757 (SSK757Q) /CSM/SS/SSK7-C/SSK757Q.Seq.d/                       1092   0.0
SLG109 (SLG109Q) /CSM/SL/SLG1-A/SLG109Q.Seq.d/                       1078   0.0
VFF590 (VFF590Q) /CSM/VF/VFF5-D/VFF590Q.Seq.d/                       1076   0.0
VSG391 (VSG391Q) /CSM/VS/VSG3-D/VSG391Q.Seq.d/                       1063   0.0
VFB472 (VFB472Q) /CSM/VF/VFB4-C/VFB472Q.Seq.d/                       1057   0.0
SFF618 (SFF618Q) /CSM/SF/SFF6-A/SFF618Q.Seq.d/                       1057   0.0
CHM210 (CHM210Q) /CSM/CH/CHM2-A/CHM210Q.Seq.d/                       1057   0.0
CHA475 (CHA475Q) /CSM/CH/CHA4-D/CHA475Q.Seq.d/                       1049   0.0
VHJ835 (VHJ835Q) /CSM/VH/VHJ8-B/VHJ835Q.Seq.d/                       1047   0.0
CHI523 (CHI523Q) /CSM/CH/CHI5-A/CHI523Q.Seq.d/                       1047   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1059  0.0  2
AC023500|AC023500.32 Homo sapiens chromosome 12 clone RP11-183H16, WORKING DRAFT SEQUENCE, 9 unordered pieces.    48  0.14  1
AC073896|AC073896.41 Homo sapiens 12 BAC RP11-977G19 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48  0.14  1
AL833124|AL833124.1 Homo sapiens mRNA; cDNA DKFZp313D0632 (from clone DKFZp313D0632).    48  0.14  1
CC492296|CC492296.1 CH240_326I24.T7 CHORI-240 Bos taurus genomic clone CH240_326I24, genomic survey sequence.    46  0.54  1
Z83233|Z83233.1 Caenorhabditis elegans cosmid K06B4.              36  1.1  3
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    42  1.1  5
AC010159|AC010159.9 Homo sapiens chromosome 10 clone RP11-326B1, WORKING DRAFT SEQUENCE, 18 unordered pieces.    40  1.8  3
AC119197|AC119197.4 Mus musculus clone RP24-180H20, WORKING DRAFT SEQUENCE, 7 unordered pieces.    36  1.9  5
AC091639|AC091639.5 Homo sapiens chromosome 8, clone RP11-61K18, complete sequence.    44  2.1  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_51(AC117176|pid:none) Dictyostelium discoideum chromoso...   192   9e-48
(Q5ZID0) RecName: Full=NmrA-like family domain-containing protei...    84   4e-15
BC068857_1(BC068857|pid:none) Xenopus laevis hypothetical protei...    77   6e-13
(Q8K2T1) RecName: Full=NmrA-like family domain-containing protei...    75   2e-12
(Q9HBL8) RecName: Full=NmrA-like family domain-containing protei...    72   1e-11
CP000750_2197(CP000750|pid:none) Kineococcus radiotolerans SRS30...    72   2e-11
EU643475_11(EU643475|pid:none) Adineta vaga clone Av212_A VIP2, ...    70   5e-11
CR382136_931(CR382136|pid:none) Debaryomyces hansenii chromosome...    69   9e-11
CR382136_822(CR382136|pid:none) Debaryomyces hansenii strain CBS...    69   1e-10
CR382133_427(CR382133|pid:none) Debaryomyces hansenii strain CBS...    65   2e-09

 psg: 0.38  gvh: 0.31  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSK757 is nuc

>SSK757Z.Seq
----------TACAATGTACCACACTTTGATTTGAAGCATAAAATTGAAGAGGAGCTAAG
AAAAATGTCTAAAGAAAATCCAAGTTTTGTAACTTCCTTTGTTTACGCTCCATTTTATAT
GCAAAATTTTAAAACTTTCTTTGCACCAAAACGTACTGTCAACGAAGCCACTCAAGAAGT
CACATATGTATTGGGCATGCCATTGAATCCTAAAATGTTGCCATTGGATATGGGCGATAT
TAATGATATCGGTTCAATCGTTGCTGTAATGATGAAAGATCCAACTAAATACTCTGGTAA
AATCATTCCATTCTCAGGTGACTGTTTACATGGTGAAAAGATCGCTGAAATTATGTCAAA
AGTAACTGGTAAGAAAGTTGTTTACAATTTCATTGAACCAAAAGATTTTGCTCAATTCGA
TTTCCCAGGTGCTGGTGAAATGGCTGAAATGTTTTCTTATTACAATGAATTTGGTGCATT
TGATAAATTAGATAAAACTGAAGCTTCAAAAATTACAAAATTAACAAATCTTGAAGAATT
TTTGAAAAAAACTAATTTTCAACTTGAATAGTTAAATATGCCATATTTATTTTAAACTTA
TTTTAATATACAAATAAATAATTAAAATAAATAATTTAAAGTTTTTGGTAAAAAA