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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL694
Library AF
(Link to library)
Clone ID AFL694
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFL694 (AFL694Q) /CSM/AF/AFL6-D/AFL694Q.Seq.d/
AAAGAAATAGCTAAATCAGATTTGGAAAAAAAGAAAAATAATAAAAATAAAATTAAATAA
AATTAAAGAGATAATTGAAAAAAATAAAAAATAAAAAAATAAAATAAAATATAAAATAAA
ATAAAATAATATAAAAAGATAATTGTATAATAGATAGATTATGCTATAGAAATGGCAATA
ACAAATGCATATTATGATTATTCACATATAGCATTAATTTCTTTATATACAATATTAGCT
ATTTTATCAATAATAAGTTTTATAAGATCAACGACCAAAAAAAATATTTTTATAATATCT
TTTCATATAGTTTTACTTATAGCGTCATTATTAAGGGCGGTATCATTTTCACTTTTTATA
ATAAATGAAGAAAAAGTTAAAGAAATTGATGGTAATCTATTGTTTCTAACAAATGAATTA
CCTAGTTTTTTTTATTTAACCTTTTTTTCAATGGCTTTACTTTTATCAATTCAAATTTTT
CAAGGAACATTAGTAGTTAAAGCAGTAGATATGCAAAAATTAAAAACAGTTGTCATTATT
GCAAATGTTGTTATTTATTTAATACTGGCAATTTTATTCATTTTGGATTTTGTATTXXXX
XXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
keiaksdlekkknnknkik*n*rdn*kk*kikk*nki*nkik*ykkiiv**IDYAIEMAI
TNAYYDYSHIALISLYTILAILSIISFIRSTTKKNIFIISFHIVLLIASLLRAVSFSLFI
INEEKVKEIDGNLLFLTNELPSFFYLTFFSMALLLSIQIFQGTLVVKAVDMQKLKTVVII
ANVVIYLILAILFILDFV---
Translated Amino Acid sequence (All Frames) 
Frame A:
keiaksdlekkknnknkik*n*rdn*kk*kikk*nki*nkik*ykkiiv**IDYAIEMAI
TNAYYDYSHIALISLYTILAILSIISFIRSTTKKNIFIISFHIVLLIASLLRAVSFSLFI
INEEKVKEIDGNLLFLTNELPSFFYLTFFSMALLLSIQIFQGTLVVKAVDMQKLKTVVII
ANVVIYLILAILFILDFV---


Frame B:
kk*lnqiwkkrkiikiklnkikeiieknkk*knkikykik*nnikr*lynr*iml*kwq*
qmhimiihi*h*flyiqy*lfyq**vl*dqrpkkifl*ylfi*fyl*rhy*gryhfhfl*
*mkkklkklmviycf*qmnylvffi*pffqwlyfyqfkffkeh**lkq*ickn*kqlsll
qmllfi*ywqfysfwily---


Frame C:
rns*irfgkkek**k*n*iklkr*lkkiknkkik*nik*nkii*kdnciidrlcyrngnn
kcil*lftysinffiynisyfinnkfykindqkkyfynifsysftysviikggiiftfyn
k*rks*rn*w*sivsnk*it*fflfnlffngftfinsnfsrniss*ssryakiknschyc
kccylfntgnfihfgfc---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL694 (AFL694Q) /CSM/AF/AFL6-D/AFL694Q.Seq.d/                        523   e-148
SSC432 (SSC432Q) /CSM/SS/SSC4-B/SSC432Q.Seq.d/                        432   e-120
VSG703 (VSG703Q) /CSM/VS/VSG7-A/VSG703Q.Seq.d/                         38   0.15
VFB246 (VFB246Q) /CSM/VF/VFB2-B/VFB246Q.Seq.d/                         38   0.15
VSH303 (VSH303Q) /CSM/VS/VSH3-A/VSH303Q.Seq.d/                         36   0.60
VFI705 (VFI705Q) /CSM/VF/VFI7-A/VFI705Q.Seq.d/                         36   0.60
VFB740 (VFB740Q) /CSM/VF/VFB7-B/VFB740Q.Seq.d/                         36   0.60
SSH502 (SSH502Q) /CSM/SS/SSH5-A/SSH502Q.Seq.d/                         36   0.60
SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                         36   0.60
CFJ227 (CFJ227Q) /CSM/CF/CFJ2-B/CFJ227Q.Seq.d/                         36   0.60
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329417) Dictyostelium discoideum cDNA clone:dda24k24, 5' ...   280   0.0    4
(AU071745) Dictyostelium discoideum slug cDNA, clone SSC432.      188   2e-43  1
(AU051937) Dictyostelium discoideum slug cDNA, clone SSC432.       62   2e-27  4
(DD010735) Diagnosis of known genetic Parameters within the ...    38   0.014  2
(AX344550) Sequence 1 from Patent WO0200932.                       38   0.016  2
(AC120090) Rattus norvegicus clone CH230-498I1, *** SEQUENCI...    52   0.025  1
(AC107109) Rattus norvegicus clone CH230-16K10, *** SEQUENCI...    52   0.025  1
(DH739361) Rattus norvegicus DNA, BAC clone: RNB1-313B10, 5'...    52   0.025  1
(AC206332) Zea mays chromosome 4 clone CH201-219C2; ZMMBBc02...    50   0.099  1
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    34   0.18   9
dna update 2009. 4. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000123_410(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    45   0.001
CP000849_1121(CP000849|pid:none) Rickettsia bellii OSU 85-389, c...    40   0.048
EU408477_1(EU408477|pid:none) Arachis hypogaea tobamovirus multi...    39   0.14
AM180355_3447(AM180355|pid:none) Clostridium difficile 630 compl...    38   0.18
CP000448_1561(CP000448|pid:none) Syntrophomonas wolfei subsp. wo...    37   0.41
AY871873_1(AY871873|pid:none) Synthetic construct hypothetical p...    37   0.53
AJ749949_1668(AJ749949|pid:none) Francisella tularensis subsp. t...    37   0.53
CP000439_18(CP000439|pid:none) Francisella tularensis subsp. nov...    37   0.53
CP000915_3(CP000915|pid:none) Francisella tularensis subsp. medi...    37   0.53
AM233362_24(AM233362|pid:none) Francisella tularensis subsp. hol...    37   0.53
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL694 is

5' end seq. ID AFL694F
5' end seq. 
>AFL694F.Seq
AAAGAAATAGCTAAATCAGATTTGGAAAAAAAGAAAAATAATAAAAATAAAATTAAATAA
AATTAAAGAGATAATTGAAAAAAATAAAAAATAAAAAAATAAAATAAAATATAAAATAAA
ATAAAATAATATAAAAAGATAATTGTATAATAGATAGATTATGCTATAGAAATGGCAATA
ACAAATGCATATTATGATTATTCACATATAGCATTAATTTCTTTATATACAATATTAGCT
ATTTTATCAATAATAAGTTTTATAAGATCAACGACCAAAAAAAATATTTTTATAATATCT
TTTCATATAGTTTTACTTATAGCGTCATTATTAAGGGCGGTATCATTTTCACTTTTTATA
ATAAATGAAGAAAAAGTTAAAGAAATTGATGGTAATCTATTGTTTCTAACAAATGAATTA
CCTAGTTTTTTTTATTTAACCTTTTTTTCAATGGCTTTACTTTTATCAATTCAAATTTTT
CAAGGAACATTAGTAGTTAAAGCAGTAGATATGCAAAAATTAAAAACAGTTGTCATTATT
GCAAATGTTGTTATTTATTTAATACTGGCAATTTTATTCATTTTGGATTTTGTATTXXXX
XXXXXX
Length of 5' end seq. 606
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -