>SSK711 (SSK711Q) /CSM/SS/SSK7-A/SSK711Q.Seq.d/
XXXXXXXXXXTAAAAAATAAAACTTAAATAATTTTTTTTAAACCGAAATAGAAATTTAAA
CATATAAAATGCCTAAGAATAAGGGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACG
AGAATGAACAAAAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTAT
TAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTAT
GTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAA
TTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTATCCTTCGTTACAATGTCGATG
AAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTG
ATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATA
TTGATACTCTTTAAACAAAGACATTATTTATATATAGAAATATTAAACAGTATTTAATGC
TGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAAAAAAAAAAAACAACATTTAA
CTCTTTTTTTTTTTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAA
TTAAAAAAAAAAAAAAGATATAAAAAAAAAAATA

---kk*nlnnff*teiei*TYKMPKNKGKGGKNRRRGKNENEQKRELQFKEEGQEYAQVL
RMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDE
ARNLKTYGELPETARINETDAFDDVEDIPFEFVAEDDIDIDTL*tktlfiyrnikqylml
*ynsnraklsppkkkkqhltlffffietkkkkg*glvikikkkkki*kkk

Frame A:
---kk*nlnnff*teiei*TYKMPKNKGKGGKNRRRGKNENEQKRELQFKEEGQEYAQVL
RMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDE
ARNLKTYGELPETARINETDAFDDVEDIPFEFVAEDDIDIDTL*tktlfiyrnikqylml
*ynsnraklsppkkkkqhltlffffietkkkkg*glvikikkkkki*kkk


Frame B:
---knkt*iiffkpk*kfkhikclrirekvvkiveevrtrmnkrenfnskkkaknmlky*
ec*vmvv*kplvlmvknvyvtlvvd*errngstmvisf*fnlettkmiklmlsfvtmsmk
lvilklmvnyqkplelmklmhlmmlkifhsnsllkmisililfkqrhylyieilnsi*cc
siivteqnyppqkkknni*lffffllkqkkkkdkdwl*klkkkkrykkkn


Frame C:
---kiklk*fflnrnrnlni*na*e*gkrw*ks*kr*ere*tkertsiqrrrpricssik
nvr*wsfrsllf*w*ktfmsh*w*ikkegmdqqw*yhfnst*rlpk**s*cypslqcr*s
s*s*nlw*itrnr*n**n*ci**c*rysirirc*r*yry*yslnkdiiyi*ky*tvfnav
v***qskiippkkkkttfnsffffy*nkkkkririgykn*kkkkdikkki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK711 (SSK711Q) /CSM/SS/SSK7-A/SSK711Q.Seq.d/                       1063   0.0
VSF521 (VSF521Q) /CSM/VS/VSF5-A/VSF521Q.Seq.d/                       1027   0.0
VHD658 (VHD658Q) /CSM/VH/VHD6-C/VHD658Q.Seq.d/                       1027   0.0
FC-AJ05 (FC-AJ05Q) /CSM/FC/FC-AJ/FC-AJ05Q.Seq.d/                     1027   0.0
AHL228 (AHL228Q) /CSM/AH/AHL2-B/AHL228Q.Seq.d/                       1027   0.0
SSK248 (SSK248Q) /CSM/SS/SSK2-B/SSK248Q.Seq.d/                        957   0.0
SSF521 (SSF521Q) /CSM/SS/SSF5-A/SSF521Q.Seq.d/                        872   0.0
SSL769 (SSL769Q) /CSM/SS/SSL7-C/SSL769Q.Seq.d/                        636   0.0
VSC777 (VSC777Q) /CSM/VS/VSC7-D/VSC777Q.Seq.d/                        408   e-113
VSA233 (VSA233Q) /CSM/VS/VSA2-B/VSA233Q.Seq.d/                        375   e-103

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB909835|CB909835.1 USDA-FP_101578 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-22_F01 5', mRNA sequence.    80  3e-28  4
BX549381|BX549381.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse107f06_q1c.    70  3e-17  4
BX558353|BX558353.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse38a11_q1c.    70  3e-17  4
BF294231|BF294231.1 001PbG02 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    70  1e-16  2
CB890651|CB890651.1 taa75h11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9U9L3 Q9U9L3 TRANSLATION INITIATION FACTOR 4C ;, mRNA sequence.    56  3e-15  3
CD535276|CD535276.1 LeukoN5_1_A08.g1_A027 Unstimulated peripheral blood leukocytes N5 Equus caballus cDNA clone LeukoN5_1_A08_A027 5', mRNA sequence.    50  6e-14  4
T18202|T18202.1 0812c3 czapPFDd2.1, Debopam Chakrabarti Plasmodium falciparum cDNA clone 0812c 5', mRNA sequence.    74  9e-12  2
U11585|U11585.1 Saccharomyces cerevisiae X2180 translation initiation factor 1A (TIF11) gene, complete cds.    54  3e-10  2
BG487302|BG487302.1 df95e07.y1 Xenopus laevis oocyte non normalized Xenopus laevis cDNA clone IMAGE:3747157 5' similar to SW:IF1A_HUMAN P47813 EUKARYOTIC TRANSLATION INITIATION FACTOR 1A ;, mRNA sequence.    52  1e-09  3
BG553439|BG553439.1 dab84b08.y1 NICHD XGC Emb4 Xenopus laevis cDNA clone IMAGE:4203614 5' similar to SW:IF1A_HUMAN P47813 EUKARYOTIC TRANSLATION INITIATION FACTOR 1A ;, mRNA sequence.    52  1e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT047385_1(BT047385|pid:none) Salmo salar clone ssal-evd-517-113...   163   4e-39
BT046728_1(BT046728|pid:none) Salmo salar clone ssal-evd-566-043...   163   5e-39
BT046786_1(BT046786|pid:none) Salmo salar clone ssal-evf-567-357...   162   9e-39
AY911362_1(AY911362|pid:none) Bos taurus clone IMAGE:7961501 X-l...   162   1e-38
BT049466_1(BT049466|pid:none) Salmo salar clone ssal-evd-532-334...   161   2e-38
BT050065_1(BT050065|pid:none) Salmo salar clone ssal-evd-558-268...   161   2e-38
AK030774_1(AK030774|pid:none) Mus musculus 8 days embryo whole b...   161   2e-38
BT049173_1(BT049173|pid:none) Salmo salar clone ssal-eve-526-175...   161   2e-38
AM910991_409(AM910991|pid:none) Plasmodium knowlesi strain H chr...   161   2e-38
(P47813) RecName: Full=Eukaryotic translation initiation factor ...   160   3e-38

 psg: 0.26  gvh: 0.37  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSK711 is nuc

>SSK711Z.Seq
----------TAAAAAATAAAACTTAAATAATTTTTTTTAAACCGAAATAGAAATTTAAA
CATATAAAATGCCTAAGAATAAGGGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACG
AGAATGAACAAAAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTAT
TAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTAT
GTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAA
TTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTATCCTTCGTTACAATGTCGATG
AAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTG
ATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATA
TTGATACTCTTTAAACAAAGACATTATTTATATATAGAAATATTAAACAGTATTTAATGC
TGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAAAAAAAAAAAACAACATTTAA
CTCTTTTTTTTTTTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAA
TTAAAAAAAAAAAAAAGATATAAAAAAAAAAATA