SSK710
Library SS
(Link to library)
Clone ID SSK710
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12218-1
Original site URL
Representative seq. ID SSK710E
(Link to Original site)
Representative DNA sequence
>SSK710 (SSK710Q) /CSM/SS/SSK7-A/SSK710Q.Seq.d/
AAATAAATAATTACTATGAAAGTTCTTGTTAAACAATTAATGAGTAAATCATTATTTACT
ATTAATTTAGATACAACTTTAGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATTCAT
AGATTACCAGTAGTTGACAATGACGGTAATCTAAAAGGAATTATCACAGATAGAGATTTA
AGATTAGCAACTGATTCACCATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAATTA
AGACTTCACAAAGTTTCTTCTATTATGAAACAAAATCCAGTTACTATCGAAGATTTTTCT
CCAGTTGTAGAGGCAGCAAAATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTATTA
GATAAAAAAGGTCGTTTAATTGGAATGGTAACAAGATCTGACCTATTGGACTTATTAATT
AAAGTTTTAGAGCCAGTACCACCACAAAGTTAAAAATAAAAAAAAAATAAAAAAAAAAAA
AAATAATAGATAATTTTATTTATTTGTTTTATTTTTTAAATAATAAAAAAAAAA
sequence update 1998. 2.24
Translated Amino Acid sequence
k*IITMKVLVKQLMSKSLFTINLDTTLDVALKSLNANSIHRLPVVDNDGNLKGIITDRDL
RLATDSPFLPENNEDRLEKLRLHKVSSIMKQNPVTIEDFSPVVEAAKLMRVTNVGGLPVL
DKKGRLIGMVTRSDLLDLLIKVLEPVPPQS*k*kknkkkkk**iilficfif*iikkk


Translated Amino Acid sequence (All Frames)
Frame A:
k*IITMKVLVKQLMSKSLFTINLDTTLDVALKSLNANSIHRLPVVDNDGNLKGIITDRDL
RLATDSPFLPENNEDRLEKLRLHKVSSIMKQNPVTIEDFSPVVEAAKLMRVTNVGGLPVL
DKKGRLIGMVTRSDLLDLLIKVLEPVPPQS*k*kknkkkkk**iilficfif*iikkk


Frame B:
nk*ll*kfllnn**vnhyllli*iql*mlp*kv*mpiqfidyq*ltmtvi*kelsqiei*
d*qlihhffqrimkidwkn*dftkflll*nkiqllskiflql*rqqn**elqm*edypy*
ikkvv*lew*qdltywty*lkf*sqyhhkvknkkkikkkknnr*fylfvlffk**kk


Frame C:
innyyessc*tine*iiiyy*frynfrcclkkfkcqfns*itss*q*r*skrnyhr*rfk
isn*ftissre**r*igkiktsqsffyyetkssyyrrffsscrgskinesykcrritrir
*krsfnwngnki*piglin*sfrastttklkikkk*kkkkiidnfiylfyflnnkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK710 (SSK710Q) /CSM/SS/SSK7-A/SSK710Q.Seq.d/ 894 0.0
SSF143 (SSF143Q) /CSM/SS/SSF1-B/SSF143Q.Seq.d/ 894 0.0
SSC856 (SSC856Q) /CSM/SS/SSC8-C/SSC856Q.Seq.d/ 888 0.0
VSF663 (VSF663Q) /CSM/VS/VSF6-C/VSF663Q.Seq.d/ 878 0.0
SSE203 (SSE203Q) /CSM/SS/SSE2-A/SSE203Q.Seq.d/ 854 0.0
SSL577 (SSL577Q) /CSM/SS/SSL5-D/SSL577Q.Seq.d/ 841 0.0
VSI609 (VSI609Q) /CSM/VS/VSI6-A/VSI609Q.Seq.d/ 835 0.0
SSD873 (SSD873Q) /CSM/SS/SSD8-D/SSD873Q.Seq.d/ 835 0.0
SSD857 (SSD857Q) /CSM/SS/SSD8-C/SSD857Q.Seq.d/ 603 e-171
SSD251 (SSD251Q) /CSM/SS/SSD2-C/SSD251Q.Seq.d/ 601 e-171

own update 2001. 3.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX346364|AX346364.1 Sequence 1435 from Patent WO0200928. 42 1e-04 2
AX251229|AX251229.1 Sequence 197 from Patent WO0168912. 42 1e-04 2
AF279135|AF279135.1 Dictyostelium discoideum spore coat structural protein SP65 (cotE) gene, complete cds. 54 0.002 1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 52 0.002 4
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 52 0.007 1
CF090761|CF090761.1 QHM6A23.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM6A23, mRNA sequence. 52 0.007 1
BJ068453|BJ068453.1 Xenopus laevis cDNA clone:XL106m05, 5' end, single read. 52 0.007 1
BH940843|BH940843.1 odf16a05.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 52 0.007 1
BX294006|BX294006.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-145M1. 48 0.012 5
BX323834|BX323834.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-48B5. 48 0.012 5
dna update 2003. 8.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CT009609_17(CT009609|pid:none) Desulfococcus multivorans vrl isl... 92 6e-18
CP000527_534(CP000527|pid:none) Desulfovibrio vulgaris subsp. vu... 92 1e-17
AE017285_2761(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 92 1e-17
CP001337_2564(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 90 4e-17
CP001087_2848(CP001087|pid:none) Desulfobacterium autotrophicum ... 89 9e-17
CP000702_1582(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 87 4e-16
CP000916_1430(CP000916|pid:none) Thermotoga neapolitana DSM 4359... 85 1e-15
CP000141_173(CP000141|pid:none) Carboxydothermus hydrogenoforman... 85 1e-15
CP000804_3679(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 83 4e-15
CP000969_1644(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 83 5e-15
protein update 2009. 7. 9
PSORT

psg: 0.76 gvh: 0.40 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSK710 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK710E
Full length Seq.
>SSK710E.Seq
AAATAAATAATTACTATGAAAGTTCTTGTTAAACAATTAATGAGTAAATCATTATTTACT
ATTAATTTAGATACAACTTTAGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATTCAT
AGATTACCAGTAGTTGACAATGACGGTAATCTAAAAGGAATTATCACAGATAGAGATTTA
AGATTAGCAACTGATTCACCATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAATTA
AGACTTCACAAAGTTTCTTCTATTATGAAACAAAATCCAGTTACTATCGAAGATTTTTCT
CCAGTTGTAGAGGCAGCAAAATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTATTA
GATAAAAAAGGTCGTTTAATTGGAATGGTAACAAGATCTGACCTATTGGACTTATTAATT
AAAGTTTTAGAGCCAGTACCACCACAAAGTTAAAAATAAAAAAAAAATAAAAAAAAAAAA
AAATAATAGATAATTTTATTTATTTGTTTTATTTTTTAAATAATAAAAAAAAAA
Length of full length seq. 534