SSK695
Library SS
(Link to library)
Clone ID SSK695
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SSK695E
(Link to Original site)
Representative DNA sequence
>SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/
GTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATTACCTATATTTTAT
TATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAAAATTTTAA
CCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTT
TCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTG
ATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTC
ATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATA
ATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAAAAAAAAAAAGTAAT
AATAATAAAAAAAAA
sequence update 1998. 2.27
Translated Amino Acid sequence
GSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAF
IRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN
*i******kkkkkskkkk****kk


Translated Amino Acid sequence (All Frames)
Frame A:
vvhmimqsicgqlvslpifyyvvshhsmlhlktyylkkf*plimisqnqnglmslnmpkl
slet*lskiqinvilpnnvlmtfgslvvinqlvlllistlislkr*rnimtkeevvnlqi
ikfnnnnnkkkkknqkkksnnnkkk


Frame B:
wfi**csryvvnwchylyfimwfptilcfisklii*knfnr*l*fprtrmdscl*tcqsf
h*klncqrsrstsycqtms**plalw**sinwfcc*splsfr*kdeei**pkkrwsifk*
lnliiiiikkkkkikkkkviiikk


Frame C:
GSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAF
IRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN
*i******kkkkkskkkk****kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/ 706 0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/ 706 0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/ 706 0.0
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/ 706 0.0
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/ 706 0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/ 706 0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/ 706 0.0
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/ 704 0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/ 698 0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/ 690 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 706 0.0 1
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds. 84 2e-12 1
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 1e-04 2
AZ676962|AZ676962.1 ENTJV60TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 1e-04 2
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 0.006 1
AX602156|AX602156.1 Sequence 85 from Patent WO02092818. 38 0.16 3
BG809925|BG809925.1 mgct001xp07f Magnaporthe grisea Appressorium Stage cDNA Magnaporthe grisea cDNA clone mgct001xp07f 5', mRNA sequence. 46 0.36 1
AL393091|AL393091.1 T3 end of clone AR0AA008F10 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 46 0.36 1
AF038622|AF038622.1 Caenorhabditis elegans cosmid R07C12. 36 0.36 3
AE014283|AE014283.1 Streptococcus agalactiae 2603V/R section 93 of 100 of the complete genome. 38 0.40 3
dna update 2003. 8.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q869W6) RecName: Full=Probable myosin light chain kinase DDB_G0... 254 7e-67
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f... 114 1e-24
(Q86AD7) RecName: Full=Probable myosin light chain kinase DDB_G0... 113 2e-24
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m... 108 4e-23
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina... 108 8e-23
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina... 108 8e-23
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO... 108 8e-23
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c... 108 8e-23
(Q54CY9) RecName: Full=Probable myosin light chain kinase DDB_G0... 108 8e-23
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d... 108 8e-23
protein update 2009. 7. 9
PSORT

psg: 0.75 gvh: 0.57 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SSK695 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK695E
Full length Seq.
>SSK695E.Seq
GTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATTACCTATATTTTAT
TATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAAAATTTTAA
CCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTT
TCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTG
ATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTC
ATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATA
ATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAAAAAAAAAAAGTAAT
AATAATAAAAAAAAA
Length of full length seq. 435