NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK676
Library SS
(Link to library)
Clone ID SSK676
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15495-1
Original site URL
Representative seq. ID SSK676Z
(Link to Original site)
Representative DNA sequence 
>SSK676 (SSK676Q) /CSM/SS/SSK6-D/SSK676Q.Seq.d/
XXXXXXXXXXTGGTGGAGTAAAATATATGGGTATTAAGGGTGACCCACAAAGTATCTATG
GTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGAACAGGCCAAGCAATCATTGTTGGCA
TTTATGATGATAAAGTCCAACCAGGATCAGCTGCACTTATTGTTGAAAAGTTAGGTGATT
ACTTAAGAGATAATGGTTATTAAGATATTAATATCTTGTTAAAACCAATTAGATTTAATT
TTAAGAATTAAAAAAAATAATAATAATAATAAAATTTAAATGTCACTACTAAAATAAATA
AATAAAAAAAAAAAACTTAAATAGTAAACCCCTAGAAAAAAAAAAAAAAAA
sequence update 1998. 2.27
Translated Amino Acid sequence 
---GGVKYMGIKGDPQSIYGKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDY
LRDNGY*dinillkpirfnfkn*kk*****nlnvttkink*kkkt*ivnp*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---GGVKYMGIKGDPQSIYGKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDY
LRDNGY*dinillkpirfnfkn*kk*****nlnvttkink*kkkt*ivnp*kkkkk


Frame B:
---ve*niwvlrvthkvsmvkreqlvvflleqakqsllafmmiksnqdqlhlllks*vit
*eimvikilisc*nqldlilrikknnnnnki*msllk*inkkkklk**tprkkkkk


Frame C:
---wskiygy*g*ptkylw*kgsnwlcsc*nrpsnhcwhl***sptrisctyc*kvr*ll
kr*wllry*ylvktn*i*f*elkkiiiiikfkchy*nk*ikkknlnskplekkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH386 (VSH386Q) /CSM/VS/VSH3-D/VSH386Q.Seq.d/                        507   e-143
VSG766 (VSG766Q) /CSM/VS/VSG7-C/VSG766Q.Seq.d/                        507   e-143
VHN220 (VHN220Q) /CSM/VH/VHN2-A/VHN220Q.Seq.d/                        507   e-143
VHL739 (VHL739Q) /CSM/VH/VHL7-B/VHL739Q.Seq.d/                        507   e-143
VHG720 (VHG720Q) /CSM/VH/VHG7-A/VHG720Q.Seq.d/                        507   e-143
VHA334 (VHA334Q) /CSM/VH/VHA3-B/VHA334Q.Seq.d/                        507   e-143
SSM730 (SSM730Q) /CSM/SS/SSM7-B/SSM730Q.Seq.d/                        507   e-143
SSM510 (SSM510Q) /CSM/SS/SSM5-A/SSM510Q.Seq.d/                        507   e-143
SSK676 (SSK676Q) /CSM/SS/SSK6-D/SSK676Q.Seq.d/                        507   e-143
SSK539 (SSK539Q) /CSM/SS/SSK5-B/SSK539Q.Seq.d/                        507   e-143
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X61581|X61581.1 D.discoideum mRNA for profilin I.                474  e-142  2
BX294188|BX294188.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-255G14.    50  0.018  1
AC115496|AC115496.4 Rattus norvegicus clone CH230-57H5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  0.018  1
BX321921|BX321921.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-114B5.    44  0.040  6
AJ542837|AJ542837.1 Equus caballus GSS, BAC clone CH241-100E10, SP6 end sequence.    48  0.071  1
BZ156311|BZ156311.1 CH230-442L15.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-442L15, DNA sequence.    48  0.071  1
AC120612|AC120612.5 Rattus norvegicus clone CH230-424E3, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.071  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48  0.071  1
AC020554|AC020554.4 Homo sapiens chromosome X clone RP11-476P22, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42  0.075  6
AC004226|AC004226.1 Homo sapiens chromosome 5, BAC clone 313n8 (LBNL H146), complete sequence.    46  0.076  2
dna update 2003. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S13199(S13199)profilin - slime mold (Physarum polycephalum)            95   9e-19
C48405(C48405)profilin-IB - Acanthamoeba sp. (tentative sequence)      79   4e-14
(Q95VF7) RecName: Full=Profilin-1B; AltName: Full=Profilin IB; A...    79   5e-14
NRL(1ACF) Profilin i - Acanthamoeba castellanii                        78   8e-14
NRL(2PRF) Profilin ia (nmr, 19 structures) - Acanthamoeba sp.          77   2e-13
(P68696) RecName: Full=Profilin-1A; AltName: Full=Profilin IA; A...    77   2e-13
(P26200) RecName: Full=Profilin-2; AltName: Full=Profilin II;  &...    76   4e-13
FJ899746_1(FJ899746|pid:none) Amaranthus retroflexus Ama r 2 pol...    75   5e-13
(Q9LEI8) RecName: Full=Profilin-6; AltName: Full=Pollen allergen...    74   2e-12
(Q9STB6) RecName: Full=Profilin-2; AltName: Full=Pollen allergen...    73   3e-12
protein update 2009. 6.14
PSORT 

 psg: 0.57  gvh: 0.53  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SSK676 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSK676Z
3' end seq. 
>SSK676Z.Seq
----------TGGTGGAGTAAAATATATGGGTATTAAGGGTGACCCACAAAGTATCTATG
GTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGAACAGGCCAAGCAATCATTGTTGGCA
TTTATGATGATAAAGTCCAACCAGGATCAGCTGCACTTATTGTTGAAAAGTTAGGTGATT
ACTTAAGAGATAATGGTTATTAAGATATTAATATCTTGTTAAAACCAATTAGATTTAATT
TTAAGAATTAAAAAAAATAATAATAATAATAAAATTTAAATGTCACTACTAAAATAAATA
AATAAAAAAAAAAAACTTAAATAGTAAACCCCTAGAAAAAAAAAAAAAAAA
Length of 3' end seq. 341
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -