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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK673
Library SS
(Link to library)
Clone ID SSK673
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05697-1
Original site URL
Representative seq. ID SSK673E
(Link to Original site)
Representative DNA sequence 
>SSK673 (SSK673Q) /CSM/SS/SSK6-D/SSK673Q.Seq.d/
AAAAAATACAAGTTTCAAAATATTTTTTAAAAAAAAAAAAAAAAAAATGAACAAATTATT
AAATTTATTAGGATTTGCAGTTTTCTTTGTTTTATGTCTTTTTTCTGTAGGCTCAAATGC
TGAAGAAAATGGTTGCAGTTCTTGGGTCCAAGCACGTGAGGGTTATACATGTTGGGCAAT
GTCAAAAGCATGTGGTATTTCATTGGATTCTTTTATGAATACTAATGGTTTAAATTTGAA
CTCCTGCAATTACATTCAAATTGGTCATGATTATTGTTGTAATTAAACAATGATAAATAA
ATTTTAATAATATCTCTTTTTGATATTATTCTTTTCA
sequence update 1998. 2.27
Translated Amino Acid sequence 
KNTSFKIFFKKKKKKMNKLLNLLGFAVFFVLCLFSVGSNAEENGCSSWVQAREGYTCWAM
SKACGISLDSFMNTNGLNLNSCNYIQIGHDYCCN*tminkf**ylflilffs
Translated Amino Acid sequence (All Frames) 
Frame A:
kkykfqnif*kkkkkneqiikfiricsflcfmsffcrlkc*rkwlqflgpst*glymlgn
vksmwyfigffyey*wfkfellqlhsnws*lll*lnndk*iliislfdiilf


Frame B:
KNTSFKIFFKKKKKKMNKLLNLLGFAVFFVLCLFSVGSNAEENGCSSWVQAREGYTCWAM
SKACGISLDSFMNTNGLNLNSCNYIQIGHDYCCN*tminkf**ylflilffs


Frame C:
kiqvskyflkkkkkk*tny*iy*dlqfslfyvffl*aqmlkkmvavlgskhvrvihvgqc
qkhvvfhwill*ilmv*i*tpaitfklvmiivvikq**infnnisf*yysf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK673 (SSK673Q) /CSM/SS/SSK6-D/SSK673Q.Seq.d/                        575   e-163
SSM756 (SSM756Q) /CSM/SS/SSM7-C/SSM756Q.Seq.d/                         44   0.001
SHI715 (SHI715Q) /CSM/SH/SHI7-A/SHI715Q.Seq.d/                         42   0.005
SHG736 (SHG736Q) /CSM/SH/SHG7-B/SHG736Q.Seq.d/                         42   0.005
CHH327 (CHH327Q) /CSM/CH/CHH3-B/CHH327Q.Seq.d/                         42   0.005
SHH489 (SHH489Q) /CSM/SH/SHH4-D/SHH489Q.Seq.d/                         38   0.082
CHI184 (CHI184Q) /CSM/CH/CHI1-D/CHI184Q.Seq.d/                         38   0.082
CHH758 (CHH758Q) /CSM/CH/CHH7-C/CHH758Q.Seq.d/                         38   0.082
AHL819 (AHL819Q) /CSM/AH/AHL8-A/AHL819Q.Seq.d/                         38   0.082
AHI737 (AHI737Q) /CSM/AH/AHI7-B/AHI737Q.Seq.d/                         38   0.082
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC005139|AC005139.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    34  4e-04  9
U17009|U17009.2 Phytophthora infestans mitochondrion, complete genome.    32  0.012  5
Z75059|Z75059.1 S.cerevisiae chromosome XV reading frame ORF YOR151c.    38  0.016  2
U67491|U67491.1 Methanococcus jannaschii section 33 of 150 of the complete genome.    34  0.018  5
AL162751|AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA  project).    40  0.050  4
U55020|U55020.1 Saccharomyces cerevisiae cosmid pEOA477 from chromosome 15R.    38  0.087  2
AL451052|AL451052.4 Human DNA sequence from clone RP11-24P14 on chromosome 1.    32  0.12  7
AC126009|AC126009.22 Medicago truncatula clone mth2-15c20, complete sequence.    34  0.17  7
AC002377|AC002377.1 Human PAC clone RP1-222H5 from Xq25-q26, complete sequence.    40  0.37  7
BH159124|BH159124.1 ENTSW78TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    28  0.43  4
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633457_174(CU633457|pid:none) Podospora anserina genomic DNA c...    42   0.009
AL844504_161(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    33   2.4
(Q54HA4) RecName: Full=GATA zinc finger domain-containing protei...    33   3.2
protein update 2009. 7. 9
PSORT 

 psg: 0.31  gvh: 0.77  alm: 0.21  top: -0.13  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.25  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SSK673 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK673E
Full length Seq. 
>SSK673E.Seq
AAAAAATACAAGTTTCAAAATATTTTTTAAAAAAAAAAAAAAAAAAATGAACAAATTATT
AAATTTATTAGGATTTGCAGTTTTCTTTGTTTTATGTCTTTTTTCTGTAGGCTCAAATGC
TGAAGAAAATGGTTGCAGTTCTTGGGTCCAAGCACGTGAGGGTTATACATGTTGGGCAAT
GTCAAAAGCATGTGGTATTTCATTGGATTCTTTTATGAATACTAATGGTTTAAATTTGAA
CTCCTGCAATTACATTCAAATTGGTCATGATTATTGTTGTAATTAAACAATGATAAATAA
ATTTTAATAATATCTCTTTTTGATATTATTCTTTTCA
Length of full length seq. 337