>SSK653 (SSK653Q) /CSM/SS/SSK6-C/SSK653Q.Seq.d/
ACATAAATTTACACATACACATTTACATATAAATAAACTTTCAACACACACGCATATATA
TATATATAATAACTAAAAAATGAAGTTAGTTGCTATGGTATTAGCAAAAAGAAAAGGGGA
TTTATTAGAAATTGCCTGTGATTTATCACAATTTGGTTTCTTTGAAAAGGGAACTGTTAA
AGAAGTAATAATAGCAGCAAGTAAAATTTTTATAAATAAATTCNATCCAAACACAAGACA
TTCAGTACCATATGAAGATTATATCTGTTTTATAGATGTTAGAGCTGAATTTGGTGGTGT
TGTATTTACAGATAAAGAATATCCAGAAAGAGTAGCAGCAAGATTATTATCGGAAATGAT
GAATGGTTATGTAAAGAAAACTCAAGGTATTATTGGTGCACCATATCCAGAATTACAAGG
TATATTTAAAAATTCGGATCCAAAAGCAAATGATAAAATTTTAGAAGTTCAAAATCAAGT
GAATGAAGTCACTTCAATTATGCATAAAAATATTGATGTTGCTTTAGGTAATACTGAAAA
AATGGAGACCCTATTAGAAACTTCTGATGATTTAAGCACAAGAAGTAAATTATTTTTAAA
ACAAGCTAAAAXXXXXXXXXX

hkfththlhinklsththiyiynn*KMKLVAMVLAKRKGDLLEIACDLSQFGFFEKGTVK
EVIIAASKIFINKFXPNTRHSVPYEDYICFIDVRAEFGGVVFTDKEYPERVAARLLSEMM
NGYVKKTQGIIGAPYPELQGIFKNSDPKANDKILEVQNQVNEVTSIMHKNIDVALGNTEK
METLLETSDDLSTRSKLFLKQAK---

Frame A:
t*iytytftyk*tfnthayiyi**lknevscygiskkkrgfirncl*fitiwfl*kgnc*
rsnnssk*nfyk*ixskhktfsti*rlylfyrc*s*iwwcciyr*risrkssskiiignd
ewlckensryywctisritryi*kfgsksk**nfrssksse*shfnya*ky*ccfr*y*k
ngdpirnf**fkhkk*iifkts*---


Frame B:
hkfththlhinklsththiyiynn*KMKLVAMVLAKRKGDLLEIACDLSQFGFFEKGTVK
EVIIAASKIFINKFXPNTRHSVPYEDYICFIDVRAEFGGVVFTDKEYPERVAARLLSEMM
NGYVKKTQGIIGAPYPELQGIFKNSDPKANDKILEVQNQVNEVTSIMHKNIDVALGNTEK
METLLETSDDLSTRSKLFLKQAK---


Frame C:
inlhihiyi*infqhtriyiyiitkk*s*llwy*qkekgiy*klpviyhnlvslkrellk
k***qqvkfl*insiqtqdiqyhmkiisvl*mlelnlvvlylqikniqke*qqdyyrk**
mvm*rklkvllvhhiqnykvylkiriqkqmikf*kfkik*mkslqlcikilmll*vilkk
wrpy*kllmi*aqevnyf*nkl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK653 (SSK653Q) /CSM/SS/SSK6-C/SSK653Q.Seq.d/                       1070   0.0
VFH657 (VFH657Q) /CSM/VF/VFH6-C/VFH657Q.Seq.d/                         38   0.15
SSH647 (SSH647Q) /CSM/SS/SSH6-B/SSH647Q.Seq.d/                         38   0.15
VHK524 (VHK524Q) /CSM/VH/VHK5-A/VHK524Q.Seq.d/                         36   0.61
VFO852 (VFO852Q) /CSM/VF/VFO8-C/VFO852Q.Seq.d/                         36   0.61
SLC501 (SLC501Q) /CSM/SL/SLC5-A/SLC501Q.Seq.d/                         36   0.61
SLC313 (SLC313Q) /CSM/SL/SLC3-A/SLC313Q.Seq.d/                         36   0.61
SLA863 (SLA863Q) /CSM/SL/SLA8-C/SLA863Q.Seq.d/                         36   0.61
SHL135 (SHL135Q) /CSM/SH/SHL1-B/SHL135Q.Seq.d/                         36   0.61
SHC248 (SHC248Q) /CSM/SH/SHC2-B/SHC248Q.Seq.d/                         36   0.61

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH936635|BH936635.1 odg58f05.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42  0.032  2
AC125193|AC125193.2 Mus musculus chromosome UNK clone RP23-268I12, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  0.040  6
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    36  0.093  9
AC137712|AC137712.2 Mus musculus clone RP23-301C8, WORKING DRAFT SEQUENCE, 13 unordered pieces.    40  0.11  2
BE054702|BE054702.2 GA__Ea0004I10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0004I10f, mRNA sequence.    44  0.13  2
AC027394|AC027394.3 Homo sapiens chromosome 2 clone RP11-809C9 map 2, WORKING DRAFT SEQUENCE, 30 unordered pieces.    44  0.16  4
AC107738|AC107738.4 Mus musculus clone RP23-348C6, WORKING DRAFT SEQUENCE, 13 ordered pieces.    46  0.19  4
BX120013|BX120013.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34  0.23  5
AB048754|AB048754.1 Bactrocera cucurbitae mitochondrial genes for 16S rRNA, tRNA-Val, 12S rRNA, partial and complete sequence.    40  0.26  2
AB048748|AB048748.1 Bactrocera cucurbitae mitochondrial genes for 16S rRNA, tRNA-Val, 12S rRNA, partial and complete sequence.    40  0.26  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001329_337(CP001329|pid:none) Micromonas sp. RCC299 chromosome...   105   1e-21
CR954202_559(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   105   1e-21
(Q9ZRD6) RecName: Full=VAMP-like protein YKT61;          Short=A...   104   2e-21
(O60073) RecName: Full=Synaptobrevin homolog ykt6;          EC=2...   103   3e-21
(O15498) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...   102   7e-21
AY892215_1(AY892215|pid:none) Synthetic construct Homo sapiens c...   102   7e-21
AK223488_1(AK223488|pid:none) Homo sapiens mRNA for SNARE protei...   102   9e-21
EF083433_1(EF083433|pid:none) Picea sitchensis clone WS02719_G11...   101   1e-20
AY375336_1(AY375336|pid:none) Gossypium barbadense fiber NTGP1-r...   101   2e-20
(Q6C537) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...   100   3e-20

 psg: 0.46  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSK653 is cyt

>SSK653F.Seq
ACATAAATTTACACATACACATTTACATATAAATAAACTTTCAACACACACGCATATATA
TATATATAATAACTAAAAAATGAAGTTAGTTGCTATGGTATTAGCAAAAAGAAAAGGGGA
TTTATTAGAAATTGCCTGTGATTTATCACAATTTGGTTTCTTTGAAAAGGGAACTGTTAA
AGAAGTAATAATAGCAGCAAGTAAAATTTTTATAAATAAATTCNATCCAAACACAAGACA
TTCAGTACCATATGAAGATTATATCTGTTTTATAGATGTTAGAGCTGAATTTGGTGGTGT
TGTATTTACAGATAAAGAATATCCAGAAAGAGTAGCAGCAAGATTATTATCGGAAATGAT
GAATGGTTATGTAAAGAAAACTCAAGGTATTATTGGTGCACCATATCCAGAATTACAAGG
TATATTTAAAAATTCGGATCCAAAAGCAAATGATAAAATTTTAGAAGTTCAAAATCAAGT
GAATGAAGTCACTTCAATTATGCATAAAAATATTGATGTTGCTTTAGGTAATACTGAAAA
AATGGAGACCCTATTAGAAACTTCTGATGATTTAAGCACAAGAAGTAAATTATTTTTAAA
ACAAGCTAAAA----------