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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK644
Library SS
(Link to library)
Clone ID SSK644
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15502-1
Original site URL
Representative seq. ID SSK644E
(Link to Original site)
Representative DNA sequence 
>SSK644 (SSK644Q) /CSM/SS/SSK6-B/SSK644Q.Seq.d/
ATATATTAAATAATTAAATAAACAAATAAATAAATAAATAAATAAATAAAATGACAGGAA
CTAGAACTTTTTTTGTTGGTGGAAATCATAAAATGAATGGTAGTAAATCAATGTTAGAAT
CTTTAAGTAAAGGAATGAATGAATCAGTTGAAAATAAAGAAAATGTTGATATTTTCATTG
CACCATCATATCCATATTTAGAATTTTTATCAAATAAATTAGATAATAAAAAGTTTAAAG
TTTGTTCACAAAATTGTTATAGTGTTGCCAAAGGTGCATTCACAGGTGAAATCAGTGCTA
ATATGTTGGTTGATTTAGGTATTCCATACGTTATCATTGGTCATAGTGAGAGAAGAAATG
TATTTAGCGAATCAAGTGAGTTAATTACAAAGAAAACAAAGTATGCAATTTCATTAGGTC
TCACAGTTATCTTATGTTTAGGTGAACTTTTAGCAGACAGAAAATCAAATAACACTGAAC
ACATCCTAAGTGAACAATTGAAAGATTTCGCTTCATTCACTCCAGAAGAATGGTCAAAGA
TCGTAATTGCCTATGAACCAGTTTGGGCAATTGGTACTGGTGCCGTTGCAACTCCACAAG
AAGCTCAAGATACTCATGTTTTCATTCGTAAATGGATTAGTGAAAAGGTTTCTGAAGATG
TTGCAAAGAAAACCTCGATCATGTATGGTGGTTCTGTTAATGCTGACAATTGTCATAACC
TTTCAAAGCAATCTGATATCGATGGTTTCTTAGTTGGTGGTGCTTCCCTTGTTGCCAGTG
ATTTCATTGCCATCATTAAATCTGCTGTTCCAAAGAAATATTGAATCTCAAATTTATAAA
AATAAAAATAAAAAATAAATAAAAATCTATAAGATTATTTTAATCTATAATGTAAAA
sequence update 1999. 6.23
Translated Amino Acid sequence 
ilnn*ink*ink*INKMTGTRTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIA
PSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNV
FSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKI
VIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNL
SKQSDIDGFLVGGASLVASDFIAIIKSAVPKKY*isnl*k*k*kinknl*dyfnl*ck
Translated Amino Acid sequence (All Frames) 
Frame A:
iy*iik*tnk*ink*ik*qelelfllveiik*mvvnqc*nl*vke*mnqlkikkmlifsl
hhhihi*nfyqin*iikslkfvhkivivlpkvhsqvksvlicwli*vfhtlslvivreem
ylanqvs*lqrkqsmqfh*vsqlsyv*vnf*qtenqitlnts*vnn*kislhslqkngqr
s*lpmnqfgqlvlvplqlhkklkilmfsfvnglvkrflkmlqrkprscmvvllmltivit
fqsnlismvs*lvvlpllpvislpslnllfqrniesqiyknknkk*ikiykiiliynvk


Frame B:
yik*lnkqink*ink*ndrn*nffcwwks*new**invrifk*rne*is*k*rkc*yfhc
tiisifrifik*ir**kv*slftkll*ccqrcihr*nqc*yvg*frysiryhws**ekkc
i*rik*vnykenkvcnfirshsylmfr*tfsrqkik*h*thpk*tierfrfihsrrmvkd
rncl*tslgnwywcrcnstrssryscfhs*md**kgf*rcckenldhvwwfc*c*qls*p
fkai*yrwflswwcfpccq*fhchh*iccskeilnlkfikikiknk*ksirlf*sim*


Frame C:
ilnn*ink*ink*INKMTGTRTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIA
PSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNV
FSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKI
VIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNL
SKQSDIDGFLVGGASLVASDFIAIIKSAVPKKY*isnl*k*k*kinknl*dyfnl*ck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK644 (SSK644Q) /CSM/SS/SSK6-B/SSK644Q.Seq.d/                       1511   0.0
VSD388 (VSD388Q) /CSM/VS/VSD3-D/VSD388Q.Seq.d/                       1491   0.0
VSI710 (VSI710Q) /CSM/VS/VSI7-A/VSI710Q.Seq.d/                       1483   0.0
VSG406 (VSG406Q) /CSM/VS/VSG4-A/VSG406Q.Seq.d/                        862   0.0
SSM191 (SSM191Q) /CSM/SS/SSM1-D/SSM191Q.Seq.d/                        733   0.0
SSI865 (SSI865Q) /CSM/SS/SSI8-C/SSI865Q.Seq.d/                        551   e-156
SSL279 (SSL279Q) /CSM/SS/SSL2-D/SSL279Q.Seq.d/                        515   e-145
VSI633 (VSI633Q) /CSM/VS/VSI6-B/VSI633Q.Seq.d/                        438   e-122
VSA293 (VSA293Q) /CSM/VS/VSA2-D/VSA293Q.Seq.d/                         38   0.23
VSA207 (VSA207Q) /CSM/VS/VSA2-A/VSA207Q.Seq.d/                         38   0.23
own update 2001. 3.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1469  0.0  4
AF124845|AF124845.1 Candida albicans triose phosphate isomerase (TPI1) gene, complete cds.    46  1e-07  3
AI508110|AI508110.1 BSBmL3SZ08K6SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ08K6SK 5', mRNA sequence.    46  5e-07  3
E17071|E17071.1 Candida albicans mRNA for antigen peptide.        46  5e-07  2
E24635|E24635.1 Antigen protein and nucleic acid encoding the same.    46  5e-07  2
AJ390491|AJ390491.1 Candida albicans mRNA for triosephosphate isomerase (tpi1 gene).    46  5e-07  2
AW561772|AW561772.1 KJBmL3SZ16F17SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone KJBmL3SZ16F17SK 5', mRNA sequence.    46  7e-07  3
AI723732|AI723732.1 BSBmL3SZ45O17SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ45O17SK 5', mRNA sequence.    46  7e-07  3
AI723702|AI723702.1 BSBmL3SZ45I8SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ45I8SK 5', mRNA sequence.    44  2e-06  3
AF063107|AF063107.1 Achlya bisexualis triosephosphate isomerase + glyceraldehyde-3-phosphate dehydrogenase (TigA) mRNA, complete cds.    50  2e-05  2
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869R8) RecName: Full=Triosephosphate isomerase;          Short...   511   e-143
FN357296_92(FN357296|pid:none) Schistosoma mansoni genome sequen...   252   1e-65
(P48501) RecName: Full=Triosephosphate isomerase;          Short...   251   2e-65
CP000601_176(CP000601|pid:none) Ostreococcus lucimarinus CCE9901...   251   2e-65
AX172665_1(AX172665|pid:none) Sequence 155 from Patent WO0144476.     250   5e-65
CR954209_8(CR954209|pid:none) Ostreococcus tauri strain OTTH0595...   249   1e-64
EU976195_1(EU976195|pid:none) Zea mays clone 687466 triosephosph...   248   2e-64
EF147662_1(EF147662|pid:none) Populus trichocarpa clone WS0124_D...   248   3e-64
BT078479_1(BT078479|pid:none) Lepeophtheirus salmonis Pacific fo...   246   1e-63
AY438596_1(AY438596|pid:none) Solanum chacoense triose phosphate...   244   4e-63
protein update 2009. 7. 8
PSORT 

 psg: 0.81  gvh: 0.27  alm: 0.27  top: 0.57  tms: 0.20  mit: 0.33  mip: 0.03
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSK644 is pla
5' end seq. ID SSK644F
5' end seq. 
>SSK644F.Seq
ATATATTAAATAATTAAATAAACAAATAAATAAATAAATAAATAAATAAAATGACAGGAA
CTAGAACTTTTTTTGTTGGTGGAAATCATAAAATGAATGGTAGTAAATCAATGTTAGAAT
CTTTAAGTAAAGGAATGAATGAATCAGTTGAAAATAAAGAAAATGTTGATATTTTCATTG
CACCATCATATCCATATTTAGAATTTTTATCAAATAAATTAGATAATAAAAAGTTTAAAG
TTTGTTCACAAAATTGTTATAGTGTTGCCAAAGGTGCATTCACAGGTGAAATCAGTGCTA
ATATGTTGGTTGATTTAGGTATTCCATACGTTATCATTGGTCATAGTGAGAGAAGAAATG
TATTTAGCGAATCAAGTGAGTTAATTACAAAGAAAACAAAGTATGCAATTTCATTAGGTC
TCACAGTTATCTTATGTTTAGGTGAACTTTTAGCAGACAGAAAATCAAATAACACTGAAC
ACATCCTAAGTGAACAATTGAAAGATTTCGCTTCATTCACTCCAGAAGAATGGTCAAAGA
TCGTAATTGCCTATGAACCAGTTTGGGCAATTGGTACTGGTGCCGTTGCAACTCCACAAG
AAGCTCAAGATACTCATG----------
Length of 5' end seq. 618
3' end seq. ID SSK644Z
3' end seq. 
>SSK644Z.Seq
----------TAGGTATTCCATACGTTATCATTGGTCATAGTGAGAGAAGAAATGTATTT
AGCGAATCAAGTGAGTTAATTACAAAGAAAACAAAGTATGCAATTTCATTAGGTCTCACA
GTTATCTTATGTTTAGGTGAACTTTTAGCAGACAGAAAATCAAATAACACTGAACACATC
CTAAGTGAACAATTGAAAGATTTCGCTTCATTCACTCCAGAAGAATGGTCAAAGATCGTA
ATTGCCTATGAACCAGTTTGGGCAATTGGTACTGGTGCCGTTGCAACTCCACAAGAAGCT
CAAGATACTCATGTTTTCATTCGTAAATGGATTAGTGAAAAGGTTTCTGAAGATGTTGCA
AAGAAAACCTCGATCATGTATGGTGGTTCTGTTAATGCTGACAATTGTCATAACCTTTCA
AAGCAATCTGATATCGATGGTTTCTTAGTTGGTGGTGCTTCCCTTGTTGCCAGTGATTTC
ATTGCCATCATTAAATCTGCTGTTCCAAAGAAATATTGAATCTCAAATTTATAAAAATAA
AAATAAAAAATAAATAAAAATCTATAAGATTATTTTAATCTATAATGTAAAA
Length of 3' end seq. 582
Connected seq. ID SSK644P
Connected seq. 
>SSK644P.Seq
ATATATTAAATAATTAAATAAACAAATAAATAAATAAATAAATAAATAAAATGACAGGAA
CTAGAACTTTTTTTGTTGGTGGAAATCATAAAATGAATGGTAGTAAATCAATGTTAGAAT
CTTTAAGTAAAGGAATGAATGAATCAGTTGAAAATAAAGAAAATGTTGATATTTTCATTG
CACCATCATATCCATATTTAGAATTTTTATCAAATAAATTAGATAATAAAAAGTTTAAAG
TTTGTTCACAAAATTGTTATAGTGTTGCCAAAGGTGCATTCACAGGTGAAATCAGTGCTA
ATATGTTGGTTGATTTAGGTATTCCATACGTTATCATTGGTCATAGTGAGAGAAGAAATG
TATTTAGCGAATCAAGTGAGTTAATTACAAAGAAAACAAAGTATGCAATTTCATTAGGTC
TCACAGTTATCTTATGTTTAGGTGAACTTTTAGCAGACAGAAAATCAAATAACACTGAAC
ACATCCTAAGTGAACAATTGAAAGATTTCGCTTCATTCACTCCAGAAGAATGGTCAAAGA
TCGTAATTGCCTATGAACCAGTTTGGGCAATTGGTACTGGTGCCGTTGCAACTCCACAAG
AAGCTCAAGATACTCATG----------TAGGTATTCCATACGTTATCATTGGTCATAGT
GAGAGAAGAAATGTATTTAGCGAATCAAGTGAGTTAATTACAAAGAAAACAAAGTATGCA
ATTTCATTAGGTCTCACAGTTATCTTATGTTTAGGTGAACTTTTAGCAGACAGAAAATCA
AATAACACTGAACACATCCTAAGTGAACAATTGAAAGATTTCGCTTCATTCACTCCAGAA
GAATGGTCAAAGATCGTAATTGCCTATGAACCAGTTTGGGCAATTGGTACTGGTGCCGTT
GCAACTCCACAAGAAGCTCAAGATACTCATGTTTTCATTCGTAAATGGATTAGTGAAAAG
GTTTCTGAAGATGTTGCAAAGAAAACCTCGATCATGTATGGTGGTTCTGTTAATGCTGAC
AATTGTCATAACCTTTCAAAGCAATCTGATATCGATGGTTTCTTAGTTGGTGGTGCTTCC
CTTGTTGCCAGTGATTTCATTGCCATCATTAAATCTGCTGTTCCAAAGAAATATTGAATC
TCAAATTTATAAAAATAAAAATAAAAAATAAATAAAAATCTATAAGATTATTTTAATCTA
TAATGTAAAA
Length of connected seq. 1200
Full length Seq ID SSK644E
Full length Seq. 
>SSK644E.Seq
ATATATTAAATAATTAAATAAACAAATAAATAAATAAATAAATAAATAAAATGACAGGAA
CTAGAACTTTTTTTGTTGGTGGAAATCATAAAATGAATGGTAGTAAATCAATGTTAGAAT
CTTTAAGTAAAGGAATGAATGAATCAGTTGAAAATAAAGAAAATGTTGATATTTTCATTG
CACCATCATATCCATATTTAGAATTTTTATCAAATAAATTAGATAATAAAAAGTTTAAAG
TTTGTTCACAAAATTGTTATAGTGTTGCCAAAGGTGCATTCACAGGTGAAATCAGTGCTA
ATATGTTGGTTGATTTAGGTATTCCATACGTTATCATTGGTCATAGTGAGAGAAGAAATG
TATTTAGCGAATCAAGTGAGTTAATTACAAAGAAAACAAAGTATGCAATTTCATTAGGTC
TCACAGTTATCTTATGTTTAGGTGAACTTTTAGCAGACAGAAAATCAAATAACACTGAAC
ACATCCTAAGTGAACAATTGAAAGATTTCGCTTCATTCACTCCAGAAGAATGGTCAAAGA
TCGTAATTGCCTATGAACCAGTTTGGGCAATTGGTACTGGTGCCGTTGCAACTCCACAAG
AAGCTCAAGATACTCATGTTTTCATTCGTAAATGGATTAGTGAAAAGGTTTCTGAAGATG
TTGCAAAGAAAACCTCGATCATGTATGGTGGTTCTGTTAATGCTGACAATTGTCATAACC
TTTCAAAGCAATCTGATATCGATGGTTTCTTAGTTGGTGGTGCTTCCCTTGTTGCCAGTG
ATTTCATTGCCATCATTAAATCTGCTGTTCCAAAGAAATATTGAATCTCAAATTTATAAA
AATAAAAATAAAAAATAAATAAAAATCTATAAGATTATTTTAATCTATAATGTAAAA
Length of full length seq. 897