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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK637
Library SS
(Link to library)
Clone ID SSK637
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSK637E
(Link to Original site)
Representative DNA sequence 
>SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/
AATTATAAACAACAAATTAAAAACTCAATTTAAAAATGAAATTATTATTTGTTTTATTAT
CTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAA
CCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAAATTAAAAAA
GCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGA
AAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACA
TTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTT
GATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTA
ACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTA
ATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAA
AAAAAAAAAAAAAA
sequence update 1998. 2.24
Translated Amino Acid sequence 
nykqqiknsi*k*nyylfyylff*yfqywynlkqpilv*kpmvtimilfsn*QIQKKIKK
ARDILSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHL
DEACGAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfik
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nykqqiknsi*k*nyylfyylff*yfqywynlkqpilv*kpmvtimilfsn*QIQKKIKK
ARDILSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHL
DEACGAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfik
kkkk


Frame B:
iinnklktqfkneiiicfiissfnifsigti*nslfwfknpw*p**fyfqinrfrkklkk
peifclerkpmkfm*wvelerdlkaiiqsiplfltqiqshffpwllkfvmlqlfm*kitl
mrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ilkyliikfikqkfl*k
kkkk


Frame C:
l*ttn*klnlkmkllfvllslllifsvlvqsetayfglkthgdhndfifkltdsekn*ks
qryfvwkgnq*sscng*n*ket*kl*skvflys*prynhiffhgy*sl*cfnylcrrsp*
*glwcfpprlllvpmvfktnkrn*nlnykskikllmikfnqikylni***sllnksfykk
kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/                        531   e-150
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/                        531   e-150
SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/                        531   e-150
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/                        531   e-150
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/                        531   e-150
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/                        531   e-150
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/                        531   e-150
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/                        531   e-150
SSH825 (SSH825Q) /CSM/SS/SSH8-B/SSH825Q.Seq.d/                        531   e-150
SSH326 (SSH326Q) /CSM/SS/SSH3-B/SSH326Q.Seq.d/                        531   e-150
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   305  0.0  3
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   109  3e-82  10
AX344566|AX344566.1 Sequence 17 from Patent WO0200932.            40  4e-05  5
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    40  0.044  7
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36  0.086  8
AQ413478|AQ413478.1 RPCI-11-186P24.TV RPCI-11 Homo sapiens genomic clone RPCI-11-186P24, genomic survey sequence.    48  0.12  1
AX458489|AX458489.1 Sequence 35 from Patent WO0246454.            44  0.14  3
BX530071|BX530071.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-189P14.    42  0.15  4
AL157774|AL157774.14 Human DNA sequence from clone RP11-442L12 on chromosome 6.    34  0.17  4
AC124704|AC124704.4 Mus musculus chromosome 6 clone RP23-480H24, complete sequence.    40  0.18  5
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   184   3e-57
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   131   1e-29
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   117   2e-25
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    46   6e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    39   0.069
EF611243_1(EF611243|pid:none) Plum pox virus isolate Penn3 polyp...    35   1.7
S47508(S47508) genome polyprotein - plum pox virus (isolate PVV-...    34   2.9
GNVSPD(S06929;JA0078)genome polyprotein - plum pox virus (strain...    34   2.9
FN357305_20(FN357305|pid:none) Schistosoma mansoni genome sequen...    33   3.8
AY953262_1(AY953262|pid:none) Plum pox virus strain D isolate Cd...    33   3.8
protein update 2009. 7. 8
PSORT 

 psg: 0.62  gvh: 0.63  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSK637 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK637E
Full length Seq. 
>SSK637E.Seq
AATTATAAACAACAAATTAAAAACTCAATTTAAAAATGAAATTATTATTTGTTTTATTAT
CTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAA
CCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAAATTAAAAAA
GCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGA
AAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACA
TTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTT
GATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTA
ACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTA
ATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAA
AAAAAAAAAAAAAA
Length of full length seq. 554