AFL686
Library AF
(Link to library)
Clone ID AFL686
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL686P
(Link to Original site)
Representative DNA sequence
>AFL686 (AFL686Q) /CSM/AF/AFL6-D/AFL686Q.Seq.d/
ATTTCATCAAAACAATGAAATTAATTTAAAATTGAAGAGAATAAAGAGAAGTGCAAAATC
ATCATCATCATCATTCTTTATTATTCATCATTATTATTATTATTATAAGTTATGTCTGAT
ATAATAAAATGTATATTTTATAGTGAATTTCATAATATATATGGTACAAAAATTTTACAT
CAATATCCTGAAGGTTTTGTTTCAAATGAAGTATTTGAAGGTTTTGCAGAATATATTATA
CCAAAACCAAAATTATGTGGAAAAATTATAACATTAACAGCATTTGATTATAAAATTTTA
GGATATCCAATATTAATGCAAGATGTAAAATATCATAGAAATGCATTATTATTTAATCTT
TGTTTTGTTTTTGATAAAAGTACAGATACAACAAATTATAATCAAATCGTTAGAAAATTA
GGCACAATATTAAGAACTTTAGAAAAGGAAACAGAATATTTATTTAATCAATCAAAAGAA
ATTGGATTAAAAGATCAACCAGATTTATCAAAAATATTAGAAACATTATATATTGAATTG
AATACATATGGTGAAAGTACATTTACAGTTGACGATGCAAATACAATTTAATGTTAAACT
ATTGAGTAGACCAGATGAACCACCAGAGATATTACCXXXXXXXXXXAAAGAAATTGGATT
AAAAGATCAACCAGATTTATCAAAAATATTAGAAACATTATATATTGAATTGAATACATA
TGGTGAAAGTACATTTACAGTTGACGATGCAAATACAATTAATGTTAAACTATTGAGTAG
ACCAGATGAACCACCAGAGATATTACCACACCAAGTACCGGTGTTAGTTGAAGAGATTGA
TACAACCAATGATTCAGAATGGGATTTAACTGTATTACAAATTCTACCCTACATCGATGG
TATCAATTATGTTGCAAGAATATCGAAATTGACAGAAATCGATATCAACCTCGTCAGTAG
CTGTGTCCAACATTTGGTTTACTACGGTATCGTTAAGATGGTAGACATTTTTCAATACTC
AAATATTTATAATCCAACACCTAAAATTAGAAAACTTGCAAGTAATTTAGACATGCAAAG
AGAGTGTCAAAGATATATAACCATATCAGGCGCTACGCCATGCTCATTCGAATTCATATT
CTCCCTCTATTCATCGTTAAGTATCGATACAACATTTAGAGAATATTGTTTGGAGAATTC
ATTAACAAGTTGGGGTATTGATGAACGTGCTTTCATTATGTTTGGTGTTATTAATGATTT
CCTAAGAAGAAAACAAAGATATCCACTCTTAACCAATCTTCAATCATTAGATTCTTTACC
ACCATCTCATAAAAAACATCTTTTAAATGGTACTAAAAATTATGATGAAATTTGTTGTAT
CCTTTCAATTGGTGNTGAAGCTGTNTAAAAATTATTATTC
sequence update 2009. 4. 3
Translated Amino Acid sequence
fhqnneinlklkrikrsaksssssffiihhyyyyyklcli**nvyfivnfiiymvqkfyi
nilkvlfqmkylkvlqnilyqnqnyvekl*h*qhliikf*diqy*ckm*niiemhyylif
vlflikvqiqqiiikslen*aqy*el*krkqniylinqkkld*kinqiyqky*khyiln*
IHMVKVHLQLTMQIQFNVKLLSRPDEPPEIL---

---KEIGLKDQPDLSKILETLYIELNTYGESTFTVDDANTINVKLLSRPDEPPEILPHQV
PVLVEEIDTTNDSEWDLTVLQILPYIDGINYVARISKLTEIDINLVSSCVQHLVYYGIVK
MVDIFQYSNIYNPTPKIRKLASNLDMQRECQRYITISGATPCSFEFIFSLYSSLSIDTTF
REYCLENSLTSWGIDERAFIMFGVINDFLRRKQRYPLLTNLQSLDSLPPSHKKHLLNGTK
NYDEICCILSIGXEAV*kllf


Translated Amino Acid sequence (All Frames)
Frame A:
isskq*n*fkieenkekckiiiiiilyysslllll*vmsdiikcifysefhniygtkilh
qypegfvsnevfegfaeyiipkpklcgkiitltafdykilgypilmqdvkyhrnallfnl
cfvfdkstdttnynqivrklgtilrtleketeylfnqskeiglkdqpdlskiletlyiel
ntygestftvddanti*c*tie*tr*ttrdit---

---KEIGLKDQPDLSKILETLYIELNTYGESTFTVDDANTINVKLLSRPDEPPEILPHQV
PVLVEEIDTTNDSEWDLTVLQILPYIDGINYVARISKLTEIDINLVSSCVQHLVYYGIVK
MVDIFQYSNIYNPTPKIRKLASNLDMQRECQRYITISGATPCSFEFIFSLYSSLSIDTTF
REYCLENSLTSWGIDERAFIMFGVINDFLRRKQRYPLLTNLQSLDSLPPSHKKHLLNGTK
NYDEICCILSIGXEAV*kllf

Frame B:
fhqnneinlklkrikrsaksssssffiihhyyyyyklcli**nvyfivnfiiymvqkfyi
nilkvlfqmkylkvlqnilyqnqnyvekl*h*qhliikf*diqy*ckm*niiemhyylif
vlflikvqiqqiiikslen*aqy*el*krkqniylinqkkld*kinqiyqky*khyiln*
IHMVKVHLQLTMQIQFNVKLLSRPDEPPEIL---

---kkld*kinqiyqky*khyiln*ihmvkvhlqltmqiqlmlny*vdqmnhqryyhtky
rc*lkrliqpmiqngi*lyykfyptsmvsimlqeyrn*qksistssvavsniwfttvslr
w*tffntqifiiqhlklenlqvi*tckesvkdi*pyqalrhahsnsyspsihr*vsiqhl
enivwrih*qvgvlmnvlslclvllmis*eenkdihs*pifnh*ilyhhliknif*mvlk
immkfvvsfqlvxklxknyy

Frame C:
fiktmkli*n*re*revqnhhhhhsllfiiiiiiisyv*ynkmyil**is*yiwyknfts
is*rfcfk*si*rfcriyytktkimwknyninsi*l*nfrisninarckis*kciii*sl
fcf**kyrynkl*snr*kirhniknfrkgnrifi*sikrnwikrstrfiknirniiy*ie
yiw*kyiys*rckynlmlny*vdqmnhqryy---

---rnwikrstrfiknirniiy*ieyiw*kyiys*rckyn*c*tie*tr*ttrdittpst
gvs*rd*ynq*frmgfncitnstlhrwyqlccknieidrnryqprq*lcptfgllryr*d
grhfsilkyl*snt*n*ktck*frhakrvskiynhirryamlirihilplfivkyryni*
rilfgefinklgy**tcfhyvwcy**fpkkktkistlnqssiirffttis*ktsfkwy*k
l**nllypfnwx*scxkiii

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL686 (AFL686Q) /CSM/AF/AFL6-D/AFL686Q.Seq.d/ 2533 0.0
SFD530 (SFD530Q) /CSM/SF/SFD5-B/SFD530Q.Seq.d/ 1499 0.0
AFO214 (AFO214Q) /CSM/AF/AFO2-A/AFO214Q.Seq.d/ 1463 0.0
AFN435 (AFN435Q) /CSM/AF/AFN4-B/AFN435Q.Seq.d/ 1356 0.0
SLF378 (SLF378Q) /CSM/SL/SLF3-D/SLF378Q.Seq.d/ 961 0.0
AFN746 (AFN746Q) /CSM/AF/AFN7-B/AFN746Q.Seq.d/ 955 0.0
CFE478 (CFE478Q) /CSM/CF/CFE4-D/CFE478Q.Seq.d/ 900 0.0
SSF488 (SSF488Q) /CSM/SS/SSF4-D/SSF488Q.Seq.d/ 46 0.001
SLK285 (SLK285Q) /CSM/SL/SLK2-D/SLK285Q.Seq.d/ 46 0.001
CHC513 (CHC513Q) /CSM/CH/CHC5-A/CHC513Q.Seq.d/ 46 0.001

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346744) Dictyostelium discoideum cDNA clone:dda24k22, 3' ... 1522 0.0 1
(BJ346110) Dictyostelium discoideum cDNA clone:dda29k04, 3' ... 1394 0.0 1
(BJ399997) Dictyostelium discoideum cDNA clone:dds8k07, 3' e... 1364 0.0 2
(BJ347508) Dictyostelium discoideum cDNA clone:dda27f10, 3' ... 1340 0.0 2
(BJ329415) Dictyostelium discoideum cDNA clone:dda24k22, 5' ... 979 0.0 2
(BJ328701) Dictyostelium discoideum cDNA clone:dda29k04, 5' ... 876 0.0 3
(BJ330079) Dictyostelium discoideum cDNA clone:dda27f10, 5' ... 868 0.0 3
(AU052956) Dictyostelium discoideum slug cDNA, clone SLF378. 961 0.0 1
(BJ328498) Dictyostelium discoideum cDNA clone:dda28l11, 5' ... 884 0.0 2
(BJ388195) Dictyostelium discoideum cDNA clone:dds8k07, 5' e... 876 0.0 2
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT020747_1(BT020747|pid:none) Bos taurus tumor suppressor candid... 182 2e-44
BC083745_1(BC083745|pid:none) Rattus norvegicus tumor suppressor... 181 4e-44
(Q9WUE4) RecName: Full=Tumor suppressor candidate 4; AltName: Fu... 181 4e-44
(Q8WTW4) RecName: Full=Tumor suppressor candidate 4; AltName: Fu... 181 4e-44
BC105243_1(BC105243|pid:none) Bos taurus tumor suppressor candid... 180 9e-44
S44938(S44938;S50527;S69008) nitrogen permease regulator NPR2 - ... 110 1e-42
AY692866_1(AY692866|pid:none) Saccharomyces cerevisiae clone FLH... 110 2e-42
BC075601_1(BC075601|pid:none) Xenopus tropicalis tumor suppresso... 176 2e-42
BC041229_1(BC041229|pid:none) Xenopus laevis nitrogen permase ho... 172 2e-41
BC122356_1(BC122356|pid:none) Danio rerio tumor suppressor candi... 170 1e-40
protein update 2009. 4. 4
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFL686 is

5' end seq. ID AFL686F
5' end seq.
>AFL686F.Seq
ATTTCATCAAAACAATGAAATTAATTTAAAATTGAAGAGAATAAAGAGAAGTGCAAAATC
ATCATCATCATCATTCTTTATTATTCATCATTATTATTATTATTATAAGTTATGTCTGAT
ATAATAAAATGTATATTTTATAGTGAATTTCATAATATATATGGTACAAAAATTTTACAT
CAATATCCTGAAGGTTTTGTTTCAAATGAAGTATTTGAAGGTTTTGCAGAATATATTATA
CCAAAACCAAAATTATGTGGAAAAATTATAACATTAACAGCATTTGATTATAAAATTTTA
GGATATCCAATATTAATGCAAGATGTAAAATATCATAGAAATGCATTATTATTTAATCTT
TGTTTTGTTTTTGATAAAAGTACAGATACAACAAATTATAATCAAATCGTTAGAAAATTA
GGCACAATATTAAGAACTTTAGAAAAGGAAACAGAATATTTATTTAATCAATCAAAAGAA
ATTGGATTAAAAGATCAACCAGATTTATCAAAAATATTAGAAACATTATATATTGAATTG
AATACATATGGTGAAAGTACATTTACAGTTGACGATGCAAATACAATTTAATGTTAAACT
ATTGAGTAGACCAGATGAACCACCAGAGATATTACCXXXXXXXXXX
Length of 5' end seq. 646
3' end seq. ID AFL686Z
3' end seq.
>AFL686Z.Seq
XXXXXXXXXXAAAGAAATTGGATTAAAAGATCAACCAGATTTATCAAAAATATTAGAAAC
ATTATATATTGAATTGAATACATATGGTGAAAGTACATTTACAGTTGACGATGCAAATAC
AATTAATGTTAAACTATTGAGTAGACCAGATGAACCACCAGAGATATTACCACACCAAGT
ACCGGTGTTAGTTGAAGAGATTGATACAACCAATGATTCAGAATGGGATTTAACTGTATT
ACAAATTCTACCCTACATCGATGGTATCAATTATGTTGCAAGAATATCGAAATTGACAGA
AATCGATATCAACCTCGTCAGTAGCTGTGTCCAACATTTGGTTTACTACGGTATCGTTAA
GATGGTAGACATTTTTCAATACTCAAATATTTATAATCCAACACCTAAAATTAGAAAACT
TGCAAGTAATTTAGACATGCAAAGAGAGTGTCAAAGATATATAACCATATCAGGCGCTAC
GCCATGCTCATTCGAATTCATATTCTCCCTCTATTCATCGTTAAGTATCGATACAACATT
TAGAGAATATTGTTTGGAGAATTCATTAACAAGTTGGGGTATTGATGAACGTGCTTTCAT
TATGTTTGGTGTTATTAATGATTTCCTAAGAAGAAAACAAAGATATCCACTCTTAACCAA
TCTTCAATCATTAGATTCTTTACCACCATCTCATAAAAAACATCTTTTAAATGGTACTAA
AAATTATGATGAAATTTGTTGTATCCTTTCAATTGGTGNTGAAGCTGTNTAAAAATTATT
ATTC
Length of 3' end seq. 784
Connected seq. ID AFL686P
Connected seq.
>AFL686P.Seq
ATTTCATCAAAACAATGAAATTAATTTAAAATTGAAGAGAATAAAGAGAAGTGCAAAATC
ATCATCATCATCATTCTTTATTATTCATCATTATTATTATTATTATAAGTTATGTCTGAT
ATAATAAAATGTATATTTTATAGTGAATTTCATAATATATATGGTACAAAAATTTTACAT
CAATATCCTGAAGGTTTTGTTTCAAATGAAGTATTTGAAGGTTTTGCAGAATATATTATA
CCAAAACCAAAATTATGTGGAAAAATTATAACATTAACAGCATTTGATTATAAAATTTTA
GGATATCCAATATTAATGCAAGATGTAAAATATCATAGAAATGCATTATTATTTAATCTT
TGTTTTGTTTTTGATAAAAGTACAGATACAACAAATTATAATCAAATCGTTAGAAAATTA
GGCACAATATTAAGAACTTTAGAAAAGGAAACAGAATATTTATTTAATCAATCAAAAGAA
ATTGGATTAAAAGATCAACCAGATTTATCAAAAATATTAGAAACATTATATATTGAATTG
AATACATATGGTGAAAGTACATTTACAGTTGACGATGCAAATACAATTTAATGTTAAACT
ATTGAGTAGACCAGATGAACCACCAGAGATATTACC----------AAAGAAATTGGATT
AAAAGATCAACCAGATTTATCAAAAATATTAGAAACATTATATATTGAATTGAATACATA
TGGTGAAAGTACATTTACAGTTGACGATGCAAATACAATTAATGTTAAACTATTGAGTAG
ACCAGATGAACCACCAGAGATATTACCACACCAAGTACCGGTGTTAGTTGAAGAGATTGA
TACAACCAATGATTCAGAATGGGATTTAACTGTATTACAAATTCTACCCTACATCGATGG
TATCAATTATGTTGCAAGAATATCGAAATTGACAGAAATCGATATCAACCTCGTCAGTAG
CTGTGTCCAACATTTGGTTTACTACGGTATCGTTAAGATGGTAGACATTTTTCAATACTC
AAATATTTATAATCCAACACCTAAAATTAGAAAACTTGCAAGTAATTTAGACATGCAAAG
AGAGTGTCAAAGATATATAACCATATCAGGCGCTACGCCATGCTCATTCGAATTCATATT
CTCCCTCTATTCATCGTTAAGTATCGATACAACATTTAGAGAATATTGTTTGGAGAATTC
ATTAACAAGTTGGGGTATTGATGAACGTGCTTTCATTATGTTTGGTGTTATTAATGATTT
CCTAAGAAGAAAACAAAGATATCCACTCTTAACCAATCTTCAATCATTAGATTCTTTACC
ACCATCTCATAAAAAACATCTTTTAAATGGTACTAAAAATTATGATGAAATTTGTTGTAT
CCTTTCAATTGGTGNTGAAGCTGTNTAAAAATTATTATTC
Length of connected seq. 1410
Full length Seq ID -
Full length Seq. -
Length of full length seq. -