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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK616
Library SS
(Link to library)
Clone ID SSK616
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSK616Z
(Link to Original site)
Representative DNA sequence 
>SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/
XXXXXXXXXXTGTACACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATC
TGACACCCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCCTCAAAAAT
TCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCAAAATCA
AGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTT
TACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACA
ATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATC
AAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGT
CCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTG
TATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAA
AAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAATATGACATA
TAATAAAAAATAAAAAATAAACAAAAAAAAAAAAAAAAAAAAAGATTAAT
sequence update 1998. 2.24
Translated Amino Acid sequence 
---TQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAQNQD
STIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSS
SSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kk
knnkklipnnl*nk*nmtynkk*kinkkkkkkkd*
Translated Amino Acid sequence (All Frames) 
Frame A:
---vhn*kvskdqfllpknltpnlklkvpkifyyqkpqkfnqpyqtkllis*lfyslkik
tqpsnnsnlllknhhsflsllllllmnlmfkllstnklnnhfykmvhhh*iqpankvvdq
vvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvfliskfqidtkhqrakyfkk
kkiikn*yqiiyktnki*hiiknkk*tkkkkkkkin


Frame B:
---ytikryqrisfccqri*hpi*n*rcpkyfiirslknstnlikqsc*yrscftrsksr
lnhqtipicc*kiiirfflyccfcs*i*cssyfqqts*tiiftrwfiiikfsqptr*wik
*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*spssr*irstkeqstlkk
kk**kintk*fikqikydi**kiknkqkkkkkkrl


Frame C:
---TQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAQNQD
STIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSS
SSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kk
knnkklipnnl*nk*nmtynkk*kinkkkkkkkd*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                       1043   0.0
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                       1035   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                       1035   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                       1035   0.0
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                       1035   0.0
SSG822 (SSG822Q) /CSM/SS/SSG8-A/SSG822Q.Seq.d/                       1035   0.0
SSF484 (SSF484Q) /CSM/SS/SSF4-D/SSF484Q.Seq.d/                       1035   0.0
SSF445 (SSF445Q) /CSM/SS/SSF4-B/SSF445Q.Seq.d/                       1035   0.0
SSE647 (SSE647Q) /CSM/SS/SSE6-B/SSE647Q.Seq.d/                       1035   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1035   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   521  0.0  2
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.54  1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.54  1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.54  1
AP004824|AP004824.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 3/10.    38  1.4  5
AC100822|AC100822.2 Homo sapiens chromosome 8, clone RP11-654O1, complete sequence.    44  1.5  2
AC118764|AC118764.3 Rattus norvegicus clone CH230-335N22, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38  1.7  2
AC133735|AC133735.2 Rattus norvegicus clone CH230-162F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  2.1  1
AC098920|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  2.1  1
AP002871|AP002871.2 Oryza sativa genomic DNA, chromosome 1, PAC clone:P0475H04.    38  2.6  4
dna update 2003. 8. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   207   3e-52
protein update 2009. 2. 2
PSORT 

 psg: 0.70  gvh: 0.47  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSK616 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSK616Z
3' end seq. 
>SSK616Z.Seq
----------TGTACACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATC
TGACACCCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCCTCAAAAAT
TCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCAAAATCA
AGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTT
TACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACA
ATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATC
AAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGT
CCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTG
TATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAA
AAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAATATGACATA
TAATAAAAAATAAAAAATAAACAAAAAAAAAAAAAAAAAAAAAGATTAAT
Length of 3' end seq. 640
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -