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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK605
Library SS
(Link to library)
Clone ID SSK605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID SSK605E
(Link to Original site)
Representative DNA sequence 
>SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/
CGAATCATTTAACGATTTAAAGAGTGCAATTGAAAAGATTGGTTATCCAGCAATTCTTAA
ATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCT
TGAACAAGCTTGGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACA
ATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGA
GTTAACCTTCCCATTGGTTACCAATAANCATCGTAATCATNTTTTACGTCAAACCATTGC
ACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGC
TCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAANNCAATGA
AACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCA
TTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGG
TTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACA
ACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAA
AATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGG
TCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAATAAAAATAAAA
TTTAAAATTAATTTTTAGAT
sequence update 1999. 6.23
Translated Amino Acid sequence 
ESFNDLKSAIEKIGYPAILKSNTMGYDGKGQVKLTDQVDLEQAWKKVTSETCATKAILEQ
YIEFESEASVIVARALDGTELTFPLVTNXHRNHXLRQTIAPAQLPEYIHKQANEIGLKIA
RSNGLVGIIAVELFVVKXNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCG
LPLGSVDFTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEG
RKMGHVTQQ*kkn*kk*k*nlklifr
Translated Amino Acid sequence (All Frames) 
Frame A:
rii*rfkecn*kdwlssns*ikyygl*w*rss*inrssrs*tslekgyl*nlcnqsnt*t
iyrv*irsisycstcfrwnrvnlpigyq*xs*sxftsnhctssiariys*tsq*nwfkdc
sfqwfgwyycrriicsexq*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclw
fafgfsrfh*tyk*s*iysttnstncndksfrsrs*rlgkntsn*rftssylc*r*ckrr
s*ngscystikkklkkikikfkinf*


Frame B:
ESFNDLKSAIEKIGYPAILKSNTMGYDGKGQVKLTDQVDLEQAWKKVTSETCATKAILEQ
YIEFESEASVIVARALDGTELTFPLVTNXHRNHXLRQTIAPAQLPEYIHKQANEIGLKIA
RSNGLVGIIAVELFVVKXNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCG
LPLGSVDFTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEG
RKMGHVTQQ*kkn*kk*k*nlklifr


Frame C:
nhlti*rvqlkrlviqqflnqilwvmmvkvkln*piksilnklgkrlplklvqpkqylnn
i*slnqkhqll*hvl*meqs*pshwlpixivixfyvkplhqlncqnifinkpmklv*rll
vpmvwlvllpsnyl**xxmkqvntl*w*mnwhqdhtivvigpskvv*plnlnn*fvvfvv
clwvqsislnv*vklnlfnnkfhql**qif*vkkltvgkkyfklkvhifismlkvmqkkv
vkwvmllnnkkkikknknki*n*fld
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1461   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1411   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1382   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1364   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1324   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1312   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1245   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1237   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1150   0.0
AHI390 (AHI390Q) /CSM/AH/AHI3-D/AHI390Q.Seq.d/                       1104   0.0
own update 2003. 6.16
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG043407|BG043407.1 su15b05.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-1594 5' similar to SW:PUR6_VIGAC P55195 PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PRECURSOR ;, mRNA sequence.    52  0.011  1
BM037950|BM037950.1 S119d01 Stem library from Oryza sativa (3-5 leaf stage) Oryza sativa cDNA clone S119d01, mRNA sequence.    44  2.7  1
AC105930|AC105930.1 Magnaporthe grisea chromosome 7 clone 14G09, *** SEQUENCING IN PROGRESS ***, 35 unordered pieces.    44  2.7  1
AQ162563|AQ162563.1 mgxb0013B15r CUGI Rice Blast BAC Library Pyricularia grisea genomic clone mgxb0013B15r, DNA sequence.    44  2.7  1
AZ689357|AZ689357.1 ENTIO71TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32  5.0  3
BX537310|BX537310.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-138N17.    38  7.2  2
AC105989|AC105989.3 Mus musculus clone RP24-95N3, WORKING DRAFT SEQUENCE, 9 ordered pieces.    42     11  1
BH974259|BH974259.1 odd84g08.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42     11  1
AC098180|AC098180.7 Rattus norvegicus clone CH230-116A3, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42     11  1
BX640593|BX640593.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-183C16.    42     11  1
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   205   2e-51
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   199   7e-50
CP000699_3106(CP000699|pid:none) Sphingomonas wittichii RW1, com...   198   1e-49
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   196   6e-49
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   194   4e-48
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   192   1e-47
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   191   2e-47
CP000319_1161(CP000319|pid:none) Nitrobacter hamburgensis X14, c...   191   2e-47
CP000463_4055(CP000463|pid:none) Rhodopseudomonas palustris BisA...   191   3e-47
AP006627_1021(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...   189   9e-47
protein update 2009. 7. 8
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSK605 is nuc
5' end seq. ID SSK605F
5' end seq. 
>SSK605F.Seq
CGAATCATTTAACGATTTAAAGAGTGCAATTGAAAAGATTGGTTATCCAGCAATTCTTAA
ATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCT
TGAACAAGCTTGGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACA
ATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGA
GTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGC
ACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGC
TCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGA
AACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCA
TTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGT--------
--
Length of 5' end seq. 532
3' end seq. ID SSK605Z
3' end seq. 
>SSK605Z.Seq
----------CAGAGTTAACCTTCCCATTGGTTACCAATAACCATCGTAATCATCTTTTA
CGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATT
GGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTA
GTGAAACCCAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCA
CACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATT
CGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCT
GAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTT
AACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGT
GATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAAAA
AAATAAAAATAAAATTTAAAATTAATTTTTAGAT
Length of 3' end seq. 564
Connected seq. ID SSK605P
Connected seq. 
>SSK605P.Seq
CGAATCATTTAACGATTTAAAGAGTGCAATTGAAAAGATTGGTTATCCAGCAATTCTTAA
ATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCT
TGAACAAGCTTGGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACA
ATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGA
GTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGC
ACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGC
TCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGA
AACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCA
TTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGT--------
--CAGAGTTAACCTTCCCATTGGTTACCAATAACCATCGTAATCATCTTTTACGTCAAAC
CATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAA
GATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAACC
CAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAG
TGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGT
TTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTAT
TCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTG
GGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGATGCAAA
AGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAATAAAA
ATAAAATTTAAAATTAATTTTTAGAT
Length of connected seq. 1096
Full length Seq ID SSK605E
Full length Seq. 
>SSK605E.Seq
CGAATCATTTAACGATTTAAAGAGTGCAATTGAAAAGATTGGTTATCCAGCAATTCTTAA
ATCAAATACTATGGGTTATGATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCT
TGAACAAGCTTGGAAAAAGGTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACA
ATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGA
GTTAACCTTCCCATTGGTTACCAATAANCATCGTAATCATNTTTTACGTCAAACCATTGC
ACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGC
TCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTGAAANNCAATGA
AACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCA
TTGGACCATCGAAGGTTGTGTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGG
TTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACA
ACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAA
AATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGG
TCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAATAAAAATAAAA
TTTAAAATTAATTTTTAGAT
Length of full length seq. 800