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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK578
Library SS
(Link to library)
Clone ID SSK578
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15147-1
Original site URL
Representative seq. ID SSK578E
(Link to Original site)
Representative DNA sequence 
>SSK578 (SSK578Q) /CSM/SS/SSK5-D/SSK578Q.Seq.d/
CATATTTATAAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTATCAAGAGCAA
CTAGATTATTATCTACAAAAAATGTTGTTGTAAACTCAATTGTAAAACACACTACCATTC
GTTCATTTGCAAGTCATGGTGGTGGTGAAGCAGGTGGTGCTTATCCAACTGAACCTGAAG
CAGGTACACAAATGATTACAAGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAAC
ACGGAAATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAAC
AACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCATCATCACGATAGTCACGCAA
ACGATGGTCACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGATGATG
TTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAA
TGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAA
TACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGG
AAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTC
ATTAAATTCGATAAATAATTTTTTAAAAAATAATACATATAAAAAGAATAATAATACAGT
TAAAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAAAAAAA
AAATAAAAAAGAAAAGATAAAGGAAGAAACATAGAGTATTGTAATAAAAAAAAAAAAAAC
AAATAAAAAGAAAAAAAAAAATTTATATATAAAAGAA
sequence update 1999. 6.23
Translated Amino Acid sequence 
yl*kkkkk*ISNYRMLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEA
GTQMITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHAN
DGHHDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSI
RYFDNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*kiihikriiiql
k*yrncrkysklknlkkkkkikkkr*rkkhrvl**kkkkqikrkkkiyi*k
Translated Amino Acid sequence (All Frames) 
Frame A:
hiykkkkknk*viigcyqeqldyylqkmll*tql*ntlpfvhlqvmvvvkqvvliqlnlk
qvhk*lqee*nlvtqsihtnteillliqfklen*qknnnnnnimfmvqvvhmaiitivtq
tmvtmmntmmnttimliqmmlkmnsqevtf*ihhhqyhtq*ihti*qlfvyfqslvhyfq
yviliinqktimnyleantwkqiqhsnknitisptnihylikfdk*ffkk*yi*ke**ys
*snteiveniqnski*kkkkk*krkdkgrnieycnkkkknk*kekkkfiykr


Frame B:
ifikkkkkink*l*dviksn*iiiykkcccklnckthyhsfickswww*srwclsn*t*s
rytndykksriw*rslfiqtrkfyc*snsn*risrrttttttscswsrlftwpssr*srk
rwsp**tp**tprsc*sr*c*r*ipkrllfkyttistipnesilfnsslftsnhwfiifn
tlf***irkrl*ii*krilgsksstqtkilryhpqisiislnsinnflknntykknnntv
kviqkl*kifktqkfkkkkknkkekikeet*sivikkkktnkkkkknlyike


Frame C:
yl*kkkkk*ISNYRMLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEA
GTQMITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHAN
DGHHDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSI
RYFDNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*kiihikriiiql
k*yrncrkysklknlkkkkkikkkr*rkkhrvl**kkkkqikrkkkiyi*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK578 (SSK578Q) /CSM/SS/SSK5-D/SSK578Q.Seq.d/                        700   0.0
SSF511 (SSF511Q) /CSM/SS/SSF5-A/SSF511Q.Seq.d/                        700   0.0
FC-AS05 (FC-AS05Q) /CSM/FC/FC-AS/FC-AS05Q.Seq.d/                      700   0.0
FC-301 (FC-301Q) /CSM/CG/CG-FC/FC-301Q.Seq.d/                         700   0.0
FC-AV08 (FC-AV08Q) /CSM/FC/FC-AV/FC-AV08Q.Seq.d/                      470   e-131
SLC336 (SLC336Q) /CSM/SL/SLC3-B/SLC336Q.Seq.d/                         40   0.056
SHG322 (SHG322Q) /CSM/SH/SHG3-A/SHG322Q.Seq.d/                         40   0.056
CHR274 (CHR274Q) /CSM/CH/CHR2-D/CHR274Q.Seq.d/                         40   0.056
CHJ854 (CHJ854Q) /CSM/CH/CHJ8-C/CHJ854Q.Seq.d/                         40   0.056
CHC276 (CHC276Q) /CSM/CH/CHC2-D/CHC276Q.Seq.d/                         40   0.056
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AW818473|AW818473.1 RC1-ST0278-020300-015-h02 ST0278 Homo sapiens cDNA, mRNA sequence.    42  0.53  2
Z68003|Z68003.1 Caenorhabditis elegans cosmid E02H4.              44  0.58  3
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                 42  0.98  5
AC023852|AC023852.3 Homo sapiens chromosome 8 clone RP11-106J22 map 8, LOW-PASS SEQUENCE SAMPLING.    38  1.4  3
BI743351|BI743351.1 kx41h10.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence.    36  7.2  2
AC016928|AC016928.20 Homo sapiens chromosome 3 clone RP11-88B8, WORKING DRAFT SEQUENCE, 1 unordered piece.    38  7.4  3
AC113857|AC113857.5 Rattus norvegicus clone CH230-258I11, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  7.4  3
BX005047|BX005047.5 Zebrafish DNA sequence from clone DKEY-38N1 in linkage group 1.    46  7.6  2
AC011653|AC011653.5 Homo sapiens clone RP11-17E20, WORKING DRAFT SEQUENCE, 29 unordered pieces.    40  9.2  4
AW790991|AW790991.1 D00331-R Lambda Zap, Stratagene Blumeria graminis f. sp. hordei cDNA clone D00331 similar to mitochondrial ribosomal protein s5, mRNA sequence.    42     12  1
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QN4) RecName: Full=Uncharacterized transmembrane protein DDB...   305   1e-81
AY338732_1(AY338732|pid:none) Avian infectious bronchitis virus ...    34   5.6
EU637854_1(EU637854|pid:none) Infectious bronchitis virus strain...    34   7.4
CP001055_1360(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    33   9.6
protein update 2009. 3. 7
PSORT 

 psg: 0.64  gvh: 0.34  alm: 0.29  top: 0.73  tms: 0.07  mit: 0.50  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSK578 is cyt
5' end seq. ID SSK578F
5' end seq. 
>SSK578F.Seq
CATATTTATAAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTATCAAGAGCAA
CTAGATTATTATCTACAAAAAATGTTGTTGTAAACTCAATTGTAAAACACACTACCATTC
GTTCATTTGCAAGTCATGGTGGTGGTGAAGCAGGTGGTGCTTATCCAACTGAACCTGAAG
CAGGTACACAAATGATTACAAGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAAC
ACGGAAATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAAC
AACAACATCATGTTCATGGTCCAGGTTGTTCACANGGCCATCATCACGATAGTCACGCAA
ACGATGGTCACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGATGATG
TTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAA
TGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAA
TACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGG
AAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTC
ATTAAATTCGATAA----------
Length of 5' end seq. 674
3' end seq. ID SSK578Z
3' end seq. 
>SSK578Z.Seq
----------AATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACA
ACAACAACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCATCATCACGATAGTCA
CGCAAACGATGGTCACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGA
TGATGTTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATA
CCCAATGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATT
TTCAATACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATA
CTTGGAAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATT
ATCTCATTAAATTCGATAAATAATTTTTTAAAAAATAATACATATAAAAAGAATAATAAT
ACAGTTAAAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAA
AAAAAAAATAAAAAAGAAAAGATAAAGGAAGAAACATAGAGTATTGTAATAAAAAAAAAA
AAAACAAATAAAAAGAAAAAAAAAAATTTATATATAAAAGAA
Length of 3' end seq. 632
Connected seq. ID SSK578P
Connected seq. 
>SSK578P.Seq
CATATTTATAAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTATCAAGAGCAA
CTAGATTATTATCTACAAAAAATGTTGTTGTAAACTCAATTGTAAAACACACTACCATTC
GTTCATTTGCAAGTCATGGTGGTGGTGAAGCAGGTGGTGCTTATCCAACTGAACCTGAAG
CAGGTACACAAATGATTACAAGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAAC
ACGGAAATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAAC
AACAACATCATGTTCATGGTCCAGGTTGTTCACANGGCCATCATCACGATAGTCACGCAA
ACGATGGTCACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGATGATG
TTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAA
TGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAA
TACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGG
AAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTC
ATTAAATTCGATAA----------AATTTTATTGTTGATCCAATTCAAATTAGAGAATTA
GCAGAAGAACAACAACAACAACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCAT
CATCACGATAGTCACGCAAACGATGGTCACCATGATGAACACCATGATGAACACCACGAT
CATGTTAATCCAGATGATGTTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCA
CCATCAGTACCATACCCAATGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATC
ATTGGTTCATTATTTTCAATACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTA
TTTAGAAGCGAATACTTGGAAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACC
CACAAATATCCATTATCTCATTAAATTCGATAAATAATTTTTTAAAAAATAATACATATA
AAAAGAATAATAATACAGTTAAAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAA
AATTTAAAAAAAAAAAAAAAAATAAAAAAGAAAAGATAAAGGAAGAAACATAGAGTATTG
TAATAAAAAAAAAAAAAACAAATAAAAAGAAAAAAAAAAATTTATATATAAAAGAA
Length of connected seq. 1306
Full length Seq ID SSK578E
Full length Seq. 
>SSK578E.Seq
CATATTTATAAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTATCAAGAGCAA
CTAGATTATTATCTACAAAAAATGTTGTTGTAAACTCAATTGTAAAACACACTACCATTC
GTTCATTTGCAAGTCATGGTGGTGGTGAAGCAGGTGGTGCTTATCCAACTGAACCTGAAG
CAGGTACACAAATGATTACAAGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAAC
ACGGAAATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAAC
AACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCATCATCACGATAGTCACGCAA
ACGATGGTCACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGATGATG
TTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAA
TGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAA
TACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGG
AAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTC
ATTAAATTCGATAAATAATTTTTTAAAAAATAATACATATAAAAAGAATAATAATACAGT
TAAAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAAAAAAA
AAATAAAAAAGAAAAGATAAAGGAAGAAACATAGAGTATTGTAATAAAAAAAAAAAAAAC
AAATAAAAAGAAAAAAAAAAATTTATATATAAAAGAA
Length of full length seq. 877