>SSK549 (SSK549Q) /CSM/SS/SSK5-C/SSK549Q.Seq.d/
XXXXXXXXXXAAATATTAATACAAAAAGTAGTAAAAAACTTTCAAACAACATCAAAAATA
AAAAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGGTTT
ATCAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTTAAA
TTCATCCACATCAAGTTTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTCATC
AACTGATGGTGCTTTCATAATGGGAACAACATCTTCTCCATCAATTGATATTCCAAATAG
AGAATCCTCTTACTTTGGGATGCTCCAAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAACTTTGTACATATCGAAGAAAA
TAATAATAATAATAATAACTTTACCAATTCAATTTTTTGTTGTAAATATTTCATAAAACA
AAAACAAAAAGACA

---y*ykk**ktfkqhqk*KMNSFFDLFKSPSKNTKTGLSSSMDSITEPKSNMSSPSLNS
STSSLSSPSLNSSPSLSSSTDGAFIMGTTSSPSIDIPNRESSYFGMLQVVEAGSF*kkkk
kkkkkkkkkksnfvhieennnnnnnftnsifcckyfikqkqkd

Frame A:
---nintksskklsnniknkk*tlsltfsnhhqkipklvyqvqwtq*lnqnqiclhhl*i
hphqvylhhl*ihlhh*ahqlmvls*weqhllhqlifqienpltlgcskllklvhskkkk
kkkkkkkkkknqtlyiskkiiiiiitlpiqffvvnis*nknkkt


Frame B:
---iliqkvvknfqttskiknelfl*pfqitikkyqnwfikfnglnn*tkikyvftifkf
ihikfiftifkfisiiklin*wcfhngnnifsin*ysk*rilllwdapsc*swfilkkkk
kkkkkkkkkkiklctyrrk******lyqfnfll*ifhktktkr


Frame C:
---y*ykk**ktfkqhqk*KMNSFFDLFKSPSKNTKTGLSSSMDSITEPKSNMSSPSLNS
STSSLSSPSLNSSPSLSSSTDGAFIMGTTSSPSIDIPNRESSYFGMLQVVEAGSF*kkkk
kkkkkkkkkksnfvhieennnnnnnftnsifcckyfikqkqkd

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK549 (SSK549Q) /CSM/SS/SSK5-C/SSK549Q.Seq.d/                        565   e-160
VSK403 (VSK403Q) /CSM/VS/VSK4-A/VSK403Q.Seq.d/                        541   e-153
VSH642 (VSH642Q) /CSM/VS/VSH6-B/VSH642Q.Seq.d/                        541   e-153
VSH314 (VSH314Q) /CSM/VS/VSH3-A/VSH314Q.Seq.d/                        541   e-153
VSD264 (VSD264Q) /CSM/VS/VSD2-C/VSD264Q.Seq.d/                        541   e-153
SSK341 (SSK341Q) /CSM/SS/SSK3-B/SSK341Q.Seq.d/                        541   e-153
SSC584 (SSC584Q) /CSM/SS/SSC5-D/SSC584Q.Seq.d/                        541   e-153
SSA325 (SSA325Q) /CSM/SS/SSA3-B/SSA325Q.Seq.d/                        541   e-153
SSI536 (SSI536Q) /CSM/SS/SSI5-B/SSI536Q.Seq.d/                        533   e-151
SSI260 (SSI260Q) /CSM/SS/SSI2-C/SSI260Q.Seq.d/                        533   e-151

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX767518|AX767518.1 Sequence 166 from Patent WO03044226.          36  0.054  4
AZ549014|AZ549014.1 ENTFR48TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.100  2
AC145023|AC145023.4 Medicago truncatula clone mth2-30j24, complete sequence.    40  0.15  7
AL691521|AL691521.7 Zebrafish DNA sequence from clone BUSM1-186K12 in linkage group 7.    36  0.16  4
AL021567|AL021567.1 Caenorhabditis elegans cosmid F21A10.         46  0.30  2
BH911620|BH911620.1 SALK_069783.53.50.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_069783.53.50.x, DNA sequence.    46  0.41  1
AB010068|AB010068.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18P6.    46  0.41  1
AV082420|AV082420.1 Mus musculus adult male tongue cDNA, partial sequence, clone 2300004K05.    34  0.44  2
AF079445|AF079445.1 Dictyostelium discoideum TipC (tipC) gene, complete cds.    44  1.1  2
AC124314|AC124314.6 Mus musculus clone RP23-193B6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  3.5  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.039
AL844506_47(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.25
A54138(A54138) acidic repetitive protein arp1 - Tetrahymena ther...    37   0.33
AB276041_1(AB276041|pid:none) Halocynthia roretzi mRNA for HrUra...    35   0.96
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    35   1.3
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    35   1.3
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.3
AE017355_4236(AE017355|pid:none) Bacillus thuringiensis serovar ...    33   2.8
AL031745_73(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   3.6
DQ437582_28(DQ437582|pid:none) Variola virus strain China Horn 1...    33   3.6

 psg: 0.56  gvh: 0.52  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for SSK549 is cyt

>SSK549Z.Seq
----------AAATATTAATACAAAAAGTAGTAAAAAACTTTCAAACAACATCAAAAATA
AAAAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGGTTT
ATCAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTTAAA
TTCATCCACATCAAGTTTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTCATC
AACTGATGGTGCTTTCATAATGGGAACAACATCTTCTCCATCAATTGATATTCCAAATAG
AGAATCCTCTTACTTTGGGATGCTCCAAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAACTTTGTACATATCGAAGAAAA
TAATAATAATAATAATAACTTTACCAATTCAATTTTTTGTTGTAAATATTTCATAAAACA
AAAACAAAAAGACA