>SSK530 (SSK530Q) /CSM/SS/SSK5-B/SSK530Q.Seq.d/
XXXXXXXXXXTTCATGCAGATCATGAATTAAATTGTTCAACCGCTGCAATGAGACATATT
TCATCATCAGGTACCGATCCATACACAAGTGTTGCTGGTGCCGCTGGTGCATTATATGGT
CCATCTCATGGTGGTGCCAATGAGGCCGTATTGGATATGTTAATTCATATCGGTTCCAAA
GAGAATATTCCACAATTCATTTCAGATGTAAAGAGCAAAAAGAAGAAATTAATGGGTTTC
GGTCATAGAATCTACAAAAACTATGATCCAAGAGCCAAGATCATTCGTAGAGTAGCTTAT
GAAGTTTTCGAAAGTTTAGGTAAAGAACCATTGATTGAAGTAGCCACTGAGTTGGAGAAA
CAAGCCTTGGAAGATGAATACTTTGTAAGCAGAAAACTTTATCCAAATGTTGATTTCTAC
TCTGGTCTCATCTATAAAGCAATGGGTTTCCCAACTGATATGTTCCCAGTTTTATTCACT
ATTCCACGTGCCGTTGGTTGGTTAGCTCATTGGGTAGAACATTTAGAAGATCCAGAAACT
AAAGTCTATCGTCCACGTCAAGTTTACAAAGGTGAATGGTTTAGAAACTATGTCCCAATC
GATGGTAGACCACCAGCTAAAGTTCGTTCTCAGGATAGTTATTCGTCTGCTACCACTAAA
AGATATTCAAAAGTTACTTCTCATTAAAATTTTAAATATTTAAAATTTATAGTTTTCATT
ATTAAATTAA

---HADHELNCSTAAMRHISSSGTDPYTSVAGAAGALYGPSHGGANEAVLDMLIHIGSKE
NIPQFISDVKSKKKKLMGFGHRIYKNYDPRAKIIRRVAYEVFESLGKEPLIEVATELEKQ
ALEDEYFVSRKLYPNVDFYSGLIYKAMGFPTDMFPVLFTIPRAVGWLAHWVEHLEDPETK
VYRPRQVYKGEWFRNYVPIDGRPPAKVRSQDSYSSATTKRYSKVTSH*nfkylkfivfii
kl

Frame A:
---scrs*iklfnrcnetyfiiryrsihkccwcrwciiwsiswwcq*grigyvnsyrfqr
eystihfrckeqkeeingfrs*nlqkl*sksqdhs*ssl*sfrkfr*rtid*ssh*vget
slgr*ilckqktlskc*fllwshl*sngfpn*yvpsfihystcrwlvsslgrtfrrsrn*
slsstsslqr*mv*klcpnrw*tts*ssfsg*lfvcyh*kifksyfslkf*ifkiysfhy
*i


Frame B:
---HADHELNCSTAAMRHISSSGTDPYTSVAGAAGALYGPSHGGANEAVLDMLIHIGSKE
NIPQFISDVKSKKKKLMGFGHRIYKNYDPRAKIIRRVAYEVFESLGKEPLIEVATELEKQ
ALEDEYFVSRKLYPNVDFYSGLIYKAMGFPTDMFPVLFTIPRAVGWLAHWVEHLEDPETK
VYRPRQVYKGEWFRNYVPIDGRPPAKVRSQDSYSSATTKRYSKVTSH*nfkylkfivfii
kl


Frame C:
---mqimn*ivqplq*difhhqvpihtqvllvplvhymvhlmvvpmrpywic*fisvpkr
ifhnsfqm*rakrrn*wvsviestktmiqeprsfve*lmkfskv*vknh*lk*plswrnk
pwkmntl*aenfiqmlistlvssikqwvsqlicsqfyslfhvplvg*lig*ni*kiqklk
sivhvkftkvngletmsqsmvdhqlkfvlrivirllplkdiqklllikilni*nl*fsll
n*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK530 (SSK530Q) /CSM/SS/SSK5-B/SSK530Q.Seq.d/                       1427   0.0
SSF821 (SSF821Q) /CSM/SS/SSF8-A/SSF821Q.Seq.d/                       1419   0.0
AFM803 (AFM803Q) /CSM/AF/AFM8-A/AFM803Q.Seq.d/                       1380   0.0
AFI655 (AFI655Q) /CSM/AF/AFI6-C/AFI655Q.Seq.d/                       1366   0.0
AFJ471 (AFJ471Q) /CSM/AF/AFJ4-C/AFJ471Q.Seq.d/                       1300   0.0
AFN717 (AFN717Q) /CSM/AF/AFN7-A/AFN717Q.Seq.d/                       1291   0.0
AFK171 (AFK171Q) /CSM/AF/AFK1-C/AFK171Q.Seq.d/                       1277   0.0
AFJ723 (AFJ723Q) /CSM/AF/AFJ7-A/AFJ723Q.Seq.d/                       1271   0.0
AFJ440 (AFJ440Q) /CSM/AF/AFJ4-B/AFJ440Q.Seq.d/                       1251   0.0
AFC579 (AFC579Q) /CSM/AF/AFC5-D/AFC579Q.Seq.d/                       1249   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY124377|AY124377.1 Dictyostelium discoideum citrate synthase (cshA) mRNA, complete cds.  1419  0.0  1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    76  1e-36  5
AF310892|AF310892.1 Dictyostelium discoideum citrate synthase (gltA) gene, partial cds; RacF2 (racF2) gene, complete cds; and unknown gene.    76  3e-19  2
BU044708|BU044708.1 PP_LEa0020E04f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0020E04f, mRNA sequence.    62  8e-11  2
BU040616|BU040616.1 PP_LEa0006L02f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0006L02f, mRNA sequence.    62  9e-11  2
AI895330|AI895330.1 EST264773 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC7M24, mRNA sequence.    46  2e-10  3
BE437000|BE437000.1 EST408118 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG35K15, mRNA sequence.    46  4e-10  3
BE436330|BE436330.1 EST407408 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG32C19, mRNA sequence.    46  5e-10  3
BI421394|BI421394.1 EST532060 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC66D6 5' end, mRNA sequence.    46  6e-10  3
AW441334|AW441334.1 EST310730 tomato fruit red ripe, TAMU Lycopersicon esculentum cDNA clone cLEN15O3 5', mRNA sequence.    46  7e-10  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK120755_1(AK120755|pid:none) Oryza sativa Japonica Group cDNA c...   307   2e-82
AB109907_1(AB109907|pid:none) Tetrahymena thermophila tgCS mRNA ...   307   2e-82
(P49299) RecName: Full=Citrate synthase, glyoxysomal;          E...   298   1e-79
AB334779_1(AB334779|pid:none) Glycine max mRNA for peroxisomal c...   295   1e-78
(Q9SJH7) RecName: Full=Citrate synthase 3, peroxisomal;         ...   295   1e-78
CR954217_232(CR954217|pid:none) Ostreococcus tauri strain OTTH05...   294   2e-78
CP000096_332(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...   290   4e-77
CP000607_394(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...   289   5e-77
CP001110_2246(CP001110|pid:none) Pelodictyon phaeoclathratiforme...   289   7e-77
AB167269_1(AB167269|pid:none) Chlorobium limicola cit gene for c...   289   7e-77

 psg: 0.75  gvh: 0.46  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSK530 is cyt

>SSK530Z.Seq
----------TTCATGCAGATCATGAATTAAATTGTTCAACCGCTGCAATGAGACATATT
TCATCATCAGGTACCGATCCATACACAAGTGTTGCTGGTGCCGCTGGTGCATTATATGGT
CCATCTCATGGTGGTGCCAATGAGGCCGTATTGGATATGTTAATTCATATCGGTTCCAAA
GAGAATATTCCACAATTCATTTCAGATGTAAAGAGCAAAAAGAAGAAATTAATGGGTTTC
GGTCATAGAATCTACAAAAACTATGATCCAAGAGCCAAGATCATTCGTAGAGTAGCTTAT
GAAGTTTTCGAAAGTTTAGGTAAAGAACCATTGATTGAAGTAGCCACTGAGTTGGAGAAA
CAAGCCTTGGAAGATGAATACTTTGTAAGCAGAAAACTTTATCCAAATGTTGATTTCTAC
TCTGGTCTCATCTATAAAGCAATGGGTTTCCCAACTGATATGTTCCCAGTTTTATTCACT
ATTCCACGTGCCGTTGGTTGGTTAGCTCATTGGGTAGAACATTTAGAAGATCCAGAAACT
AAAGTCTATCGTCCACGTCAAGTTTACAAAGGTGAATGGTTTAGAAACTATGTCCCAATC
GATGGTAGACCACCAGCTAAAGTTCGTTCTCAGGATAGTTATTCGTCTGCTACCACTAAA
AGATATTCAAAAGTTACTTCTCATTAAAATTTTAAATATTTAAAATTTATAGTTTTCATT
ATTAAATTAA