>SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/
XXXXXXXXXXTGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTA
ATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAA
TTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATC
CAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAA
CAACATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATT
ATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAAC
CAATCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAA
TTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATCATTGGTTTAAAGA
AATATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTATCCATTTATGAATG
CAAAATATGATTATATCACATTACCAGGTTGTCCAGCAAATGGTATCGATTATGAAAATG
GCAATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTTAAATTAAATTGGT
TATAAATAAAAACTAAAAACAAAAATAATAAAAAAAAAAAAAAAAAAAAAAAA

---ELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQLNQYIEWMQQYNISNP
VYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCSTVFKRDYINLFTEKPQP
IDFTEHYDDIFKFYEAVLEIKEGSIAQIIERILSIIGLKKYIYVQGEYYLLELNYPFMNA
KYDYITLPGCPANGIDYENGNFIHLN*iilkldyfklnwl*iktknknnkkkkkkkk

Frame A:
---ELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQLNQYIEWMQQYNISNP
VYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCSTVFKRDYINLFTEKPQP
IDFTEHYDDIFKFYEAVLEIKEGSIAQIIERILSIIGLKKYIYVQGEYYLLELNYPFMNA
KYDYITLPGCPANGIDYENGNFIHLN*iilkldyfklnwl*iktknknnkkkkkkkk


Frame B:
---nfygvmlvsfvlfhtlmkligiktsiqllqkliweqlmvln*inisngcnniifqiq
ytkhgtsgtimvkiclfhqqhvmislnnqsni*vvlvliiivqqfsreitlifslknhnq
sisqnimmislnsmkly*klkkaqlhkslkefyqslv*rniftfkvniiy*n*iihl*mq
nmiishyqvvqqmvsimkmailfisirlf*n*iiln*igyk*klktkiikkkkkkk


Frame C:
---tfmv*cwyplycsih**nllg*khlfncfknlygnn*wysiksiyrmdati*yfkss
ipnmgrleqlwsrfvcsinnm**fhstinrtfr*ywy*l*lfnsfqerlh*sfh*ktttn
rfhrtl**yl*il*scirn*rrlnctnh*knfinhwfkeiylrsr*ilfiriklsiyeck
i*lyhitrlsskwyrl*kwqfyssqldyfkirlf*iklvinkn*kqk**kkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                       1201   0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                     1185   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                        1185   0.0
FC-AG17 (FC-AG17Q) /CSM/FC/FC-AG/FC-AG17Q.Seq.d/                      957   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        928   0.0
SSC271 (SSC271Q) /CSM/SS/SSC2-C/SSC271Q.Seq.d/                        920   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        908   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                        890   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        886   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        864   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   577   0.0    13
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34   0.001  13
AP003362|AP003362.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 5/9.    32   0.004  14
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    42   0.006  11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32   0.011  13
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   0.014  11
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   0.018  12
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   0.024  11
AC147642|AC147642.1 Mus musculus chromosome UNK clone RP23-27D6, WORKING DRAFT SEQUENCE, 14 unordered pieces.    36   0.059  8
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36   0.064  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   436   e-121
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   128   2e-28
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    77   5e-13
(Q54WC3) RecName: Full=Cln5-like protein 2; Flags: Precursor;          70   8e-11
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    69   1e-10
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    66   9e-10
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    66   9e-10
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...    66   1e-09
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    66   1e-09
CR761663_1(CR761663|pid:none) Xenopus tropicalis finished cDNA, ...    65   3e-09

 psg: 0.75  gvh: 0.38  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSK458 is cyt

>SSK458Z.Seq
----------TGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTA
ATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAA
TTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATC
CAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAA
CAACATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATT
ATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAAC
CAATCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAA
TTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATCATTGGTTTAAAGA
AATATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTATCCATTTATGAATG
CAAAATATGATTATATCACATTACCAGGTTGTCCAGCAAATGGTATCGATTATGAAAATG
GCAATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTTAAATTAAATTGGT
TATAAATAAAAACTAAAAACAAAAATAATAAAAAAAAAAAAAAAAAAAAAAAA