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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL667
Library AF
(Link to library)
Clone ID AFL667
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL667P
(Link to Original site)
Representative DNA sequence 
>AFL667 (AFL667Q) /CSM/AF/AFL6-C/AFL667Q.Seq.d/
TTTGAAACTGAAGGATATGGTGAATTAACCGAAGGAATTGTACAAAAATTTATTGATAAA
AAATTGAGAATTCCAGTTTTATCAAATCTAGATCCATCATCACCAATTAATTTAAGAGGT
AAAGTTATAAATCCTGATTTATTTCAATATTTCTTTAGAAAATCTCCAAATAATAGTGGT
GGTGGTGAAAAATCAGGTAAAAACTTTGAAATTAAATTAAAATTAAAATTATTAAAAAAC
CAAGAAACTGGATTAATTGAATTTGAAAGTGATAAATTCTTTCCAATTGATACAAATAAT
AATTTAACATTATCAATTCCAACAAATTCAATAAAATCTTATAAAGATTCAGATGGTAAA
ATACATAATTATCATTTTTGTTTAAAATTTAATAATAAATTATATTTTAATGGTACAAAT
TTAAATGAAGAGTTTATTAGATTCACTGGTGATGATGATGTTTTATGTTTTCATTAATGA
TAAATTAGTTATTGXXXXXXXXXXGNANATTNTGNNNNTTNATCANNNANTANGNNNTNN
NANNGNNNTNNNANTGNNANAGGAGATNNNTTTNNAGNNNANTGATNNATGNTTNNATGA
TNTANAGTGTNATNCNANNNNTGGTAAATTTGAAGCAATAGGGTGANNCAATGNAATGTN
ATGGTAAATGTCANNNTGGTGTTTGTTCNAATAGNNCNTGCATTGANAAAGATTCANAAT
TCTGTTCCAAAGAACTAAATGATAATGATCCNAATNATCTTTCTTTTGTGATCCAAATAT
TGGTTGTAGGGCATCAATTATTANAACATCTAAACCAACTCCAACTCCAACACCAACATT
AACACCAACACCCACACCAACACCCAAACCAACATCAACACCCANAACCAACATCAAAAC
CAACATCCACACCTACACCAACACCCAAACAAACAAAGAGTCCACCACCATGTGATGGTA
TAATATGTAAAACAAAATACGTTTTTAAAAAGGTTTGGAATACTTTATTTGATTAAAAAA
ATAAAAATAAAAATAAAAATAAAAATAAAAATAAAATAAATG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
lklkdmvn*pkelyknllikn*efqfyqi*ihhhqli*evkl*iliyfnislenlqiivv
vvknqvktlkln*n*ny*ktkkld*lnlkvinsfqliqiii*hyqfqqiq*nlikiqmvk
yiiiifv*nliinyilmvqi*MKSLLDSLVMMMFYVFINDKLVI---

---XIXXXXXXXXXXXXXXXXXEXXXXXXDXXXXDXXCXXXXGKFEAIG*xnxmxw*msx
wclfx*xxh*xrfxilfqrtk***sxxsffcdpnigcrasiixtskptptptptltptpt
ptpkptstpxtniktnihtytntqtnkesttm*wynm*nkirf*kgleyfi*lkk*k*k*
k*k*k*nk
Translated Amino Acid sequence (All Frames) 
Frame A:
fetegygeltegivqkfidkklripvlsnldpsspinlrgkvinpdlfqyffrkspnnsg
ggeksgknfeiklklkllknqetgliefesdkffpidtnnnltlsiptnsiksykdsdgk
ihnyhfclkfnnklyfngtnlneefirftgdddvlcfh***isy---

---xxxxxxsxxxxxxxxxxxxgdxfxxx*xmxx*xxvxxxxw*i*snrvxqxnvmvnvx
xvfvxixxalxkixnsvpkn*mimixxifll*skywl*ginyxni*tnsnsntnintnth
tntqtnintxnqhqnqhphlhqhpnkqrvhhhvmv*yvkqntflkrfgilylikkikiki
kikikik*m

Frame B:
lklkdmvn*pkelyknllikn*efqfyqi*ihhhqli*evkl*iliyfnislenlqiivv
vvknqvktlkln*n*ny*ktkkld*lnlkvinsfqliqiii*hyqfqqiq*nlikiqmvk
yiiiifv*nliinyilmvqi*MKSLLDSLVMMMFYVFINDKLVI---

---XIXXXXXXXXXXXXXXXXXEXXXXXXDXXXXDXXCXXXXGKFEAIG*xnxmxw*msx
wclfx*xxh*xrfxilfqrtk***sxxsffcdpnigcrasiixtskptptptptltptpt
ptpkptstpxtniktnihtytntqtnkesttm*wynm*nkirf*kgleyfi*lkk*k*k*
k*k*k*nk

Frame C:
*n*riw*inrrnctkiy**kienssfiksrsiitn*fkr*syks*fisifl*kisk**ww
w*kir*kl*n*ikikiikkprnwin*i*k**ilsn*yk**fniinsnkfnkil*rfrw*n
t*lsflfki***iif*wykfk*rvy*ihw***cfmfslmin*ll---

---xxxxxixxxxxxxxxxxxrrxxxxxxxxxxmxxsvxxxxvnlkq*gxxmxcxgkcxx
gvcsnxxcixkdsxfcskelndndpnxlsfviqilvvghqllxhlnqlqlqhqh*hqhph
qhpnqhqhpxptskptstptptpkqtkspppcdgiicktkyvfkkvwntlfd*knknknk
nknknkin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL667 (AFL667Q) /CSM/AF/AFL6-C/AFL667Q.Seq.d/                        505   e-142
SSE559 (SSE559Q) /CSM/SS/SSE5-C/SSE559Q.Seq.d/                        444   e-123
AFO627 (AFO627Q) /CSM/AF/AFO6-B/AFO627Q.Seq.d/                        391   e-107
AFN429 (AFN429Q) /CSM/AF/AFN4-B/AFN429Q.Seq.d/                        391   e-107
AFB757 (AFB757Q) /CSM/AF/AFB7-C/AFB757Q.Seq.d/                        391   e-107
AFG490 (AFG490Q) /CSM/AF/AFG4-D/AFG490Q.Seq.d/                        387   e-106
AFG467 (AFG467Q) /CSM/AF/AFG4-C/AFG467Q.Seq.d/                        387   e-106
AFN730 (AFN730Q) /CSM/AF/AFN7-B/AFN730Q.Seq.d/                        385   e-105
AFO126 (AFO126Q) /CSM/AF/AFO1-B/AFO126Q.Seq.d/                        383   e-105
AFI105 (AFI105Q) /CSM/AF/AFI1-A/AFI105Q.Seq.d/                        383   e-105
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329322) Dictyostelium discoideum cDNA clone:dda24e18, 5' ...   371   e-169  3
(BJ330094) Dictyostelium discoideum cDNA clone:dda27j08, 5' ...   371   e-161  4
(BJ324048) Dictyostelium discoideum cDNA clone:dda4b15, 5' e...   371   e-161  4
(BJ328495) Dictyostelium discoideum cDNA clone:dda28l07, 5' ...   355   e-132  2
(BJ328968) Dictyostelium discoideum cDNA clone:dda30e08, 5' ...   355   e-132  2
(BJ386708) Dictyostelium discoideum cDNA clone:dds10a07, 5' ...   349   e-130  2
(BJ325311) Dictyostelium discoideum cDNA clone:dda13d24, 5' ...   337   e-126  3
(BJ325265) Dictyostelium discoideum cDNA clone:dda13f18, 5' ...   337   e-126  3
(BJ328737) Dictyostelium discoideum cDNA clone:dda29c07, 5' ...   337   e-124  2
(BJ368387) Dictyostelium discoideum cDNA clone:ddc46b16, 5' ...   317   e-120  2
dna update 2009. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 80   1e-13
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...    80   1e-13
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    69   3e-10
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    65   5e-09
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                 63   1e-08
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor;                 61   5e-08
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 58   6e-07
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    57   8e-07
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 50   2e-04
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 45   0.005
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL667 is

5' end seq. ID AFL667F
5' end seq. 
>AFL667F.Seq
TTTGAAACTGAAGGATATGGTGAATTAACCGAAGGAATTGTACAAAAATTTATTGATAAA
AAATTGAGAATTCCAGTTTTATCAAATCTAGATCCATCATCACCAATTAATTTAAGAGGT
AAAGTTATAAATCCTGATTTATTTCAATATTTCTTTAGAAAATCTCCAAATAATAGTGGT
GGTGGTGAAAAATCAGGTAAAAACTTTGAAATTAAATTAAAATTAAAATTATTAAAAAAC
CAAGAAACTGGATTAATTGAATTTGAAAGTGATAAATTCTTTCCAATTGATACAAATAAT
AATTTAACATTATCAATTCCAACAAATTCAATAAAATCTTATAAAGATTCAGATGGTAAA
ATACATAATTATCATTTTTGTTTAAAATTTAATAATAAATTATATTTTAATGGTACAAAT
TTAAATGAAGAGTTTATTAGATTCACTGGTGATGATGATGTTTTATGTTTTCATTAATGA
TAAATTAGTTATTGXXXXXXXXXX
Length of 5' end seq. 504
3' end seq. ID AFL667Z
3' end seq. 
>AFL667Z.Seq
XXXXXXXXXXGNANATTNTGNNNNTTNATCANNNANTANGNNNTNNNANNGNNNTNNNAN
TGNNANAGGAGATNNNTTTNNAGNNNANTGATNNATGNTTNNATGATNTANAGTGTNATN
CNANNNNTGGTAAATTTGAAGCAATAGGGTGANNCAATGNAATGTNATGGTAAATGTCAN
NNTGGTGTTTGTTCNAATAGNNCNTGCATTGANAAAGATTCANAATTCTGTTCCAAAGAA
CTAAATGATAATGATCCNAATNATCTTTCTTTTGTGATCCAAATATTGGTTGTAGGGCAT
CAATTATTANAACATCTAAACCAACTCCAACTCCAACACCAACATTAACACCAACACCCA
CACCAACACCCAAACCAACATCAACACCCANAACCAACATCAAAACCAACATCCACACCT
ACACCAACACCCAAACAAACAAAGAGTCCACCACCATGTGATGGTATAATATGTAAAACA
AAATACGTTTTTAAAAAGGTTTGGAATACTTTATTTGATTAAAAAAATAAAAATAAAAAT
AAAAATAAAAATAAAAATAAAATAAATG
Length of 3' end seq. 568
Connected seq. ID AFL667P
Connected seq. 
>AFL667P.Seq
TTTGAAACTGAAGGATATGGTGAATTAACCGAAGGAATTGTACAAAAATTTATTGATAAA
AAATTGAGAATTCCAGTTTTATCAAATCTAGATCCATCATCACCAATTAATTTAAGAGGT
AAAGTTATAAATCCTGATTTATTTCAATATTTCTTTAGAAAATCTCCAAATAATAGTGGT
GGTGGTGAAAAATCAGGTAAAAACTTTGAAATTAAATTAAAATTAAAATTATTAAAAAAC
CAAGAAACTGGATTAATTGAATTTGAAAGTGATAAATTCTTTCCAATTGATACAAATAAT
AATTTAACATTATCAATTCCAACAAATTCAATAAAATCTTATAAAGATTCAGATGGTAAA
ATACATAATTATCATTTTTGTTTAAAATTTAATAATAAATTATATTTTAATGGTACAAAT
TTAAATGAAGAGTTTATTAGATTCACTGGTGATGATGATGTTTTATGTTTTCATTAATGA
TAAATTAGTTATTG----------GNANATTNTGNNNNTTNATCANNNANTANGNNNTNN
NANNGNNNTNNNANTGNNANAGGAGATNNNTTTNNAGNNNANTGATNNATGNTTNNATGA
TNTANAGTGTNATNCNANNNNTGGTAAATTTGAAGCAATAGGGTGANNCAATGNAATGTN
ATGGTAAATGTCANNNTGGTGTTTGTTCNAATAGNNCNTGCATTGANAAAGATTCANAAT
TCTGTTCCAAAGAACTAAATGATAATGATCCNAATNATCTTTCTTTTGTGATCCAAATAT
TGGTTGTAGGGCATCAATTATTANAACATCTAAACCAACTCCAACTCCAACACCAACATT
AACACCAACACCCACACCAACACCCAAACCAACATCAACACCCANAACCAACATCAAAAC
CAACATCCACACCTACACCAACACCCAAACAAACAAAGAGTCCACCACCATGTGATGGTA
TAATATGTAAAACAAAATACGTTTTTAAAAAGGTTTGGAATACTTTATTTGATTAAAAAA
ATAAAAATAAAAATAAAAATAAAAATAAAAATAAAATAAATG
Length of connected seq. 1052
Full length Seq ID -
Full length Seq. -
Length of full length seq. -