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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK428
Library SS
(Link to library)
Clone ID SSK428
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05674-1
Original site URL
Representative seq. ID SSK428F
(Link to Original site)
Representative DNA sequence 
>SSK428 (SSK428Q) /CSM/SS/SSK4-B/SSK428Q.Seq.d/
ATAACAAACAAAAAACAGTACCCACACAAAAAATTTATAAATAGTTTAAAATAAAAATAA
TATCAAAATAAACACATATAAATGATTTATTAAAAAAAAAAAACAATAAAATAAAATAAA
TTAATAAATAAAAAAAAACAATAAAATTAAATAAATTAATAAATAAATTAATAAATAAAT
AAATAAATAAATAAATXXXXXXXXXX
sequence update 1998.11.19
Translated Amino Acid sequence 
ITNKKQYPHKKFINSLK*k*yqnkhi*miy*kkktik*nklinkkkq*n*in**in**in
k*ink---
Translated Amino Acid sequence (All Frames) 
Frame A:
ITNKKQYPHKKFINSLK*k*yqnkhi*miy*kkktik*nklinkkkq*n*in**in**in
k*ink---


Frame B:
*qtknsthtknl*iv*nknnikintyk*fikkkkq*nkin**ikknnkik*ink*ink*i
nk*i---


Frame C:
nkqktvptqkiyk*fkikiisk*thindllkkknnkik*ink*kktiklnklinklink*
ink*---
Homology vs CSM-cDNA 

 ***** No hits found ******

  Database: CSM
    Posted date:  Nov 5, 1999 10:04 PM
  Number of letters in database: 9,314,741
  Number of sequences in database:  15,740

Lambda     K      H
   -1.00    -1.00    -1.00

Gapped
Lambda     K      H
   -1.00    -1.00    -1.00








Dictyostelium discoideum cDNA Project Home
own update 1999.11. 6
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
   -1.00    -1.00    -1.00

[blastall] WARNING:  [000.000]  SSK428: SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  SSK428: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2004. 2.18
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 103,684,193
protein update 2009. 6.14
PSORT -
5' end seq. ID SSK428F
5' end seq. 
>SSK428F.Seq
ATAACAAACAAAAAACAGTACCCACACAAAAAATTTATAAATAGTTTAAAATAAAAATAA
TATCAAAATAAACACATATAAATGATTTATTAAAAAAAAAAAACAATAAAATAAAATAAA
TTAATAAATAAAAAAAAACAATAAAATTAAATAAATTAATAAATAAATTAATAAATAAAT
AAATAAATAAATAAAT----------
Length of 5' end seq. 196
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -