>SSK426 (SSK426Q) /CSM/SS/SSK4-B/SSK426Q.Seq.d/
ATAAACTTATATTTATAAAAATGACAGANATTCTTAGATATTGTCAAGGTATCATGCAAC
GTGGTATCAAAGAATCTATTAAAACATTATATTACACAGGTGAACTCAAATTTGGTACAT
TAGTTGGTGTTGATAAAGTTGGTAATAGATATTATGAAAATAGACAAGAAATCTATGGAA
GACATAGATGGGTAGAATATGGAGATTACAAATCAAATGATCCAACCACCATCCCACCAG
AATATCACAGTTGGATTCACCACGTTTCTGATAAACTCCCAAGTGAAATGCTTCCATTTT
CACCAACATACAAAAGACCACATATTGCCAATCCAACTGGTACTGATGGTGCCTATACAC
CACCAAATTTCTTATTCAATATTGAAAAATCAAAAGAAGAACTTCAAAAAGAAGAAAAGA
ATGATAACAAACAATAATTTAGTATGAATAATAATAATAAAATAATAATAXXXXXXXXXX

KLIFIKMTXILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYYENRQEIYGR
HRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSPTYKRPHIANPTGTDGAYTP
PNFLFNIEKSKEELQKEEKNDNKQ*fsmnnnnkii---

Frame A:
inlyl*k*qxfldivkvscnvvsknllkhyitqvnsnlvh*lvliklvidimkidkksme
didg*nmeitnqmiqppshqnitvgfttflinsqvkcfhfhqhtkdhilpiqlvlmvpih
hqisysilknqkknfkkkkrmitnnnlv*iiiik**---


Frame B:
*tyiykndrxs*ilsryhatwyqriy*niilhr*tqiwyiswc**sw**il*k*trnlwk
t*mgriwrlqik*snhhptrisqldsprf**tpk*nasiftniqkttycqsnwy*wclyt
tkfliqy*kikrrtskrrke**qtii*ye****nnn---


Frame C:
KLIFIKMTXILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYYENRQEIYGR
HRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSPTYKRPHIANPTGTDGAYTP
PNFLFNIEKSKEELQKEEKNDNKQ*fsmnnnnkii---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK426 (SSK426Q) /CSM/SS/SSK4-B/SSK426Q.Seq.d/                        755   0.0
VFJ869 (VFJ869Q) /CSM/VF/VFJ8-C/VFJ869Q.Seq.d/                        737   0.0
FC-AC10 (FC-AC10Q) /CSM/FC/FC-AC/FC-AC10Q.Seq.d/                      708   0.0
SSM336 (SSM336Q) /CSM/SS/SSM3-B/SSM336Q.Seq.d/                         36   0.47
SLH634 (SLH634Q) /CSM/SL/SLH6-B/SLH634Q.Seq.d/                         36   0.47
AHE518 (AHE518Q) /CSM/AH/AHE5-A/AHE518Q.Seq.d/                         36   0.47
AHB236 (AHB236Q) /CSM/AH/AHB2-B/AHB236Q.Seq.d/                         36   0.47
AHA686 (AHA686Q) /CSM/AH/AHA6-D/AHA686Q.Seq.d/                         36   0.47
AFC170 (AFC170Q) /CSM/AF/AFC1-C/AFC170Q.Seq.d/                         36   0.47
VHQ324 (VHQ324Q) /CSM/VH/VHQ3-A/VHQ324Q.Seq.d/                         34   1.9

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC036132|AC036132.1 Homo sapiens chromosome 1 clone RP11-178D7 map 1, LOW-PASS SEQUENCE SAMPLING.    42   2e-05  3
BQ104476|BQ104476.1 fc0497.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc0497.e 5', mRNA sequence.    46   3e-05  2
CF349401|CF349401.1 fc3079.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc3079.e 5', mRNA sequence.    46   3e-05  2
BG269745|BG269745.1 L48-3842T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-3842 5', mRNA sequence.    40   0.002  2
AC080183|AC080183.7 Homo sapiens chromosome , clone RP11-1O24, complete sequence.    40   0.062  6
AC011258|AC011258.1 Homo sapiens chromosome 18 clone 343_A_21 map 18, LOW-PASS SEQUENCE SAMPLING.    38   0.21   2
CB822108|CB822108.1 EST 2959 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be005d08 3', mRNA sequence.    32   0.32   2
AQ721978|AQ721978.1 HS_5568_A2_A06_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=1144 Col=12 Row=A, genomic survey sequence.    40   0.42   2
AE017146|AE017146.1 Helicobacter hepaticus ATCC 51449 section 3 of 6 of the complete genome.    46   0.45   1
AC104082|AC104082.3 Homo sapiens chromosome 4 clone RP11-570L13, complete sequence.    38   0.52   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017345_399(AE017345|pid:none) Cryptococcus neoformans var. neo...    92   8e-18
BT075977_1(BT075977|pid:none) Caligus rogercresseyi clone crog-e...    88   1e-16
AY814630_1(AY814630|pid:none) Schistosoma japonicum SJCHGC08585 ...    86   4e-16
BT077831_1(BT077831|pid:none) Lepeophtheirus salmonis clone lsal...    84   2e-15
AY118779_1(AY118779|pid:none) Drosophila melanogaster GH12382 fu...    82   6e-15
AE014134_446(AE014134|pid:none) Drosophila melanogaster chromoso...    82   6e-15
BC084520_1(BC084520|pid:none) Xenopus tropicalis hypothetical LO...    81   1e-14
EF084009_1(EF084009|pid:none) Picea sitchensis clone WS0274_K03 ...    81   1e-14
DQ215400_1(DQ215400|pid:none) Taeniopygia guttata clone 0061P000...    80   2e-14
DQ215401_1(DQ215401|pid:none) Taeniopygia guttata clone 0058P005...    80   2e-14

 psg: 0.75  gvh: 0.52  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSK426 is nuc

>SSK426F.Seq
ATAAACTTATATTTATAAAAATGACAGANATTCTTAGATATTGTCAAGGTATCATGCAAC
GTGGTATCAAAGAATCTATTAAAACATTATATTACACAGGTGAACTCAAATTTGGTACAT
TAGTTGGTGTTGATAAAGTTGGTAATAGATATTATGAAAATAGACAAGAAATCTATGGAA
GACATAGATGGGTAGAATATGGAGATTACAAATCAAATGATCCAACCACCATCCCACCAG
AATATCACAGTTGGATTCACCACGTTTCTGATAAACTCCCAAGTGAAATGCTTCCATTTT
CACCAACATACAAAAGACCACATATTGCCAATCCAACTGGTACTGATGGTGCCTATACAC
CACCAAATTTCTTATTCAATATTGAAAAATCAAAAGAAGAACTTCAAAAAGAAGAAAAGA
ATGATAACAAACAATAATTTAGTATGAATAATAATAATAAAATAATAATA----------