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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL661
Library AF
(Link to library)
Clone ID AFL661
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID AFL661P
(Link to Original site)
Representative DNA sequence 
>AFL661 (AFL661Q) /CSM/AF/AFL6-C/AFL661Q.Seq.d/
AGCATTAAAAATAAAGAAAAAGATAATAGTAACAAAGAAGATAAAGAACATAAGGAAGAT
AAAGAAGATAAACAAGAAGAAGATAAAGAAAATAATGAAACAGACAACAATGAAAAAAGT
AATAAAATTGATGAAGAAAGTCGAGATAATACTAAAAATACTGATGGTGGCGAAGATAAG
AATAATAAAAATATTGTAGAAAAAAAAAATAATAATGAAAAAGGTGATGATAATAATATT
GATGATGGTGATGAAATTATGAAAAATAAAGAAGATGAGAATGGTGAAGGTAATAATAAT
AATAATAATAATAATAATAATAAAGAAGGTGTAAGTGAAGTTCAAAAATTGGGTAGAGGT
CATAAAGATGAAAAACTTATAATTCAAAATGGTGTTAGTGGTGAAACTAAAATTAATCCA
AGTAGAAAGAAACTTTTAGATATTAATACATTTGAATTTAATTCACAATTACCAACATCA
TCATCATCATTATCATCATCATCAACACAACCATTACTACTTTTGAAGGGTGGCAGTGGT
GATGATGCACAAGATTTCTACCAAGCACCAGTGTATGATTATACATTTAAAACTGCACCT
TXXXXXXXXXXCTCTATCAAATCATTGATATTGAAGAACCATCGATTGCAGAGTATTGGG
CATCTGTAAAGATTCAATCAACTTGTCAAAAAAAATTTGGTTGGTTCTCAGAGTCTTCAT
TTAGAGAAGGTCTAGAAAGAATGAAAGCAAGATTCGGTGTAATGGATAATAAAATGAGAT
TTAAATCAAGATCAAATACATCCACCGCTACCACTACTTCTACTAAATCAACTCAACCAA
AATCAACTCAACCAAAAGAACCTAAATTAAAATCAACACAACCAAAAGAGCCTAGACCTA
AAGGAAGACCAAGGAAATATGCCATTAAAAAAGATAAAAATAATAATAATAATGTCGATA
ACAACAATGATGATAGTATTGATAAAATGGATTTGGATGATGAAGAAACAACAACAAAGA
GTAATAAACAAAACAAAGAAATTGATGAATCATTAAAGAATGATACATTAGCTCAAATGG
AAAAAGATAATGAATATTTACATGGAAAGAATGAAGAGATTGAAATTGAAATTGATGGTG
GTGTCGTTGGTGGATTCGATTATGATGATGATGACGATGATGAGGATAAACCTTTTGAAT
TATTAGATGATTTCGATGGTACGGATAATATTCAAATGAAACAAATTGATGATTTCTTTG
GTACTCAAACAAATGAAGATAGGAAGAAGATGAATCAGATTTTGATGAAGAGGAAGAAGA
AGAAGAAGAAGATTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
SIKNKEKDNSNKEDKEHKEDKEDKQEEDKENNETDNNEKSNKIDEESRDNTKNTDGGEDK
NNKNIVEKKNNNEKGDDNNIDDGDEIMKNKEDENGEGNNNNNNNNNNKEGVSEVQKLGRG
HKDEKLIIQNGVSGETKINPSRKKLLDINTFEFNSQLPTSSSSLSSSSTQPLLLLKGGSG
DDAQDFYQAPVYDYTFKTAP---

---LYQIIDIEEPSIAEYWASVKIQSTCQKKFGWFSESSFREGLERMKARFGVMDNKMRF
KSRSNTSTATTTSTKSTQPKSTQPKEPKLKSTQPKEPRPKGRPRKYAIKKDKNNNNNVDN
NNDDSIDKMDLDDEETTTKSNKQNKEIDESLKNDTLAQMEKDNEYLHGKNEEIEIEIDGG
VVGGFDYDDDDDDEDKPFELLDDFDGTDNIQMKQIDDFFGTQTNEDRKKMNQILMKRKKK
KKKI
Translated Amino Acid sequence (All Frames) 
Frame A:
SIKNKEKDNSNKEDKEHKEDKEDKQEEDKENNETDNNEKSNKIDEESRDNTKNTDGGEDK
NNKNIVEKKNNNEKGDDNNIDDGDEIMKNKEDENGEGNNNNNNNNNNKEGVSEVQKLGRG
HKDEKLIIQNGVSGETKINPSRKKLLDINTFEFNSQLPTSSSSLSSSSTQPLLLLKGGSG
DDAQDFYQAPVYDYTFKTAP---

---LYQIIDIEEPSIAEYWASVKIQSTCQKKFGWFSESSFREGLERMKARFGVMDNKMRF
KSRSNTSTATTTSTKSTQPKSTQPKEPKLKSTQPKEPRPKGRPRKYAIKKDKNNNNNVDN
NNDDSIDKMDLDDEETTTKSNKQNKEIDESLKNDTLAQMEKDNEYLHGKNEEIEIEIDGG
VVGGFDYDDDDDDEDKPFELLDDFDGTDNIQMKQIDDFFGTQTNEDRKKMNQILMKRKKK
KKKI

Frame B:
alkikkkiivtkkiknirkikkinkkkikkimkqttmkkviklmkkveiilkilmvakir
iikil*kkkiimkkvmiiilmmvmkl*kikkmrmvkviiiiiiiiiikkv*vkfknwvev
ikmknl*fkmvlvvklkliqvernf*ilihlnlihnyqhhhhhyhhhqhnhyyf*rvavv
mmhkistkhqcmiihlklhl---

---sikslilknhrlqsighl*rfnqlvkknlvgsqslhlekv*ke*kqdsv*wiik*dl
nqdqihpplpllllnqlnqnqlnqknln*nqhnqksldlkedqgnmplkkikiiiimsit
tmmivlikwiwmmkkqqqrvinktkklmnh*rmih*lkwkkimniymermkrlklklmvv
slvdsimmmmtmmrinllny*mismvriifk*nklmislvlkqmkigrr*irf**rgrrr
rrrf

Frame C:
h*k*rkr***qrr*rt*gr*rr*trrr*rk**nrqq*kk**n**rksr*y*ky*wwrr*e
**kycrkkk***kr****y**w**nyek*rr*ew*r***********rrck*sskig*rs
*r*ktynskwc*w*n*n*sk*ketfry*yi*i*ftitniiiiiiiiinttittfegwqw*
*ctrflpstsv*lyi*nct---

---lsnh*y*rtidcrvlgickdsinlskkiwlvlrvfi*rrsrkneskircng**nei*
ikikyihryhyfy*instkinstkrt*ikinttkra*t*rktkeich*kr*k****cr*q
q***y**ngfg**rnnnke**tkqrn**iike*yissngkr**iftwke*rd*n*n*wwc
rwwirl****r**g*tf*iir*frwyg*ysnetn**flwysnk*r*eedesdfdeeeeee
eed
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL661 (AFL661Q) /CSM/AF/AFL6-C/AFL661Q.Seq.d/                        525   e-148
CHG629 (CHG629Q) /CSM/CH/CHG6-B/CHG629Q.Seq.d/                        276   8e-73
SSF660 (SSF660Q) /CSM/SS/SSF6-C/SSF660Q.Seq.d/                         42   0.022
CHB254 (CHB254Q) /CSM/CH/CHB2-C/CHB254Q.Seq.d/                         40   0.085
VHI678 (VHI678Q) /CSM/VH/VHI6-D/VHI678Q.Seq.d/                         38   0.34
VHG491 (VHG491Q) /CSM/VH/VHG4-D/VHG491Q.Seq.d/                         38   0.34
SSC674 (SSC674Q) /CSM/SS/SSC6-D/SSC674Q.Seq.d/                         38   0.34
SHH721 (SHH721Q) /CSM/SH/SHH7-A/SHH721Q.Seq.d/                         38   0.34
SFI527 (SFI527Q) /CSM/SF/SFI5-B/SFI527Q.Seq.d/                         38   0.34
FC-BK03 (FC-BK03Q) /CSM/FC/FC-BK/FC-BK03Q.Seq.d/                       38   0.34
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346657) Dictyostelium discoideum cDNA clone:dda24i16, 3' ...   341   0.0    5
(BJ329337) Dictyostelium discoideum cDNA clone:dda24i16, 5' ...   301   e-154  3
(BJ379589) Dictyostelium discoideum cDNA clone:ddc35i08, 3' ...   276   2e-69  1
(DY609791) IMMUNEF045809L7 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri...    52   0.056  1
(CZ126676) OA_BBa0016F17.r OA_BBa Oryza alta genomic clone O...    46   0.063  2
(AE001416) Plasmodium falciparum 3D7 chromosome 2 section 53...    38   0.28   3
(AC232569) Brassica rapa subsp. pekinensis clone KBrH122D17,...    40   0.55   4
(AC146855) Medicago truncatula clone mth2-16c23, complete se...    44   0.59   2
(AC188570) Pan troglodytes BAC clone CH251-706I3 from chromo...    48   0.88   1
(AC004456) Homo sapiens PAC clone RP5-1100F23 from 7, comple...    48   0.88   1
dna update 2009. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910995_93(AM910995|pid:none) Plasmodium knowlesi strain H chro...    37   1.2
T11662(T11662)probable transcription factor 44K chain - fission ...    35   7.6
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL661 is

5' end seq. ID AFL661F
5' end seq. 
>AFL661F.Seq
AGCATTAAAAATAAAGAAAAAGATAATAGTAACAAAGAAGATAAAGAACATAAGGAAGAT
AAAGAAGATAAACAAGAAGAAGATAAAGAAAATAATGAAACAGACAACAATGAAAAAAGT
AATAAAATTGATGAAGAAAGTCGAGATAATACTAAAAATACTGATGGTGGCGAAGATAAG
AATAATAAAAATATTGTAGAAAAAAAAAATAATAATGAAAAAGGTGATGATAATAATATT
GATGATGGTGATGAAATTATGAAAAATAAAGAAGATGAGAATGGTGAAGGTAATAATAAT
AATAATAATAATAATAATAATAAAGAAGGTGTAAGTGAAGTTCAAAAATTGGGTAGAGGT
CATAAAGATGAAAAACTTATAATTCAAAATGGTGTTAGTGGTGAAACTAAAATTAATCCA
AGTAGAAAGAAACTTTTAGATATTAATACATTTGAATTTAATTCACAATTACCAACATCA
TCATCATCATTATCATCATCATCAACACAACCATTACTACTTTTGAAGGGTGGCAGTGGT
GATGATGCACAAGATTTCTACCAAGCACCAGTGTATGATTATACATTTAAAACTGCACCT
TXXXXXXXXXX
Length of 5' end seq. 611
3' end seq. ID AFL661Z
3' end seq. 
>AFL661Z.Seq
XXXXXXXXXXCTCTATCAAATCATTGATATTGAAGAACCATCGATTGCAGAGTATTGGGC
ATCTGTAAAGATTCAATCAACTTGTCAAAAAAAATTTGGTTGGTTCTCAGAGTCTTCATT
TAGAGAAGGTCTAGAAAGAATGAAAGCAAGATTCGGTGTAATGGATAATAAAATGAGATT
TAAATCAAGATCAAATACATCCACCGCTACCACTACTTCTACTAAATCAACTCAACCAAA
ATCAACTCAACCAAAAGAACCTAAATTAAAATCAACACAACCAAAAGAGCCTAGACCTAA
AGGAAGACCAAGGAAATATGCCATTAAAAAAGATAAAAATAATAATAATAATGTCGATAA
CAACAATGATGATAGTATTGATAAAATGGATTTGGATGATGAAGAAACAACAACAAAGAG
TAATAAACAAAACAAAGAAATTGATGAATCATTAAAGAATGATACATTAGCTCAAATGGA
AAAAGATAATGAATATTTACATGGAAAGAATGAAGAGATTGAAATTGAAATTGATGGTGG
TGTCGTTGGTGGATTCGATTATGATGATGATGACGATGATGAGGATAAACCTTTTGAATT
ATTAGATGATTTCGATGGTACGGATAATATTCAAATGAAACAAATTGATGATTTCTTTGG
TACTCAAACAAATGAAGATAGGAAGAAGATGAATCAGATTTTGATGAAGAGGAAGAAGAA
GAAGAAGAAGATTT
Length of 3' end seq. 734
Connected seq. ID AFL661P
Connected seq. 
>AFL661P.Seq
AGCATTAAAAATAAAGAAAAAGATAATAGTAACAAAGAAGATAAAGAACATAAGGAAGAT
AAAGAAGATAAACAAGAAGAAGATAAAGAAAATAATGAAACAGACAACAATGAAAAAAGT
AATAAAATTGATGAAGAAAGTCGAGATAATACTAAAAATACTGATGGTGGCGAAGATAAG
AATAATAAAAATATTGTAGAAAAAAAAAATAATAATGAAAAAGGTGATGATAATAATATT
GATGATGGTGATGAAATTATGAAAAATAAAGAAGATGAGAATGGTGAAGGTAATAATAAT
AATAATAATAATAATAATAATAAAGAAGGTGTAAGTGAAGTTCAAAAATTGGGTAGAGGT
CATAAAGATGAAAAACTTATAATTCAAAATGGTGTTAGTGGTGAAACTAAAATTAATCCA
AGTAGAAAGAAACTTTTAGATATTAATACATTTGAATTTAATTCACAATTACCAACATCA
TCATCATCATTATCATCATCATCAACACAACCATTACTACTTTTGAAGGGTGGCAGTGGT
GATGATGCACAAGATTTCTACCAAGCACCAGTGTATGATTATACATTTAAAACTGCACCT
T----------CTCTATCAAATCATTGATATTGAAGAACCATCGATTGCAGAGTATTGGG
CATCTGTAAAGATTCAATCAACTTGTCAAAAAAAATTTGGTTGGTTCTCAGAGTCTTCAT
TTAGAGAAGGTCTAGAAAGAATGAAAGCAAGATTCGGTGTAATGGATAATAAAATGAGAT
TTAAATCAAGATCAAATACATCCACCGCTACCACTACTTCTACTAAATCAACTCAACCAA
AATCAACTCAACCAAAAGAACCTAAATTAAAATCAACACAACCAAAAGAGCCTAGACCTA
AAGGAAGACCAAGGAAATATGCCATTAAAAAAGATAAAAATAATAATAATAATGTCGATA
ACAACAATGATGATAGTATTGATAAAATGGATTTGGATGATGAAGAAACAACAACAAAGA
GTAATAAACAAAACAAAGAAATTGATGAATCATTAAAGAATGATACATTAGCTCAAATGG
AAAAAGATAATGAATATTTACATGGAAAGAATGAAGAGATTGAAATTGAAATTGATGGTG
GTGTCGTTGGTGGATTCGATTATGATGATGATGACGATGATGAGGATAAACCTTTTGAAT
TATTAGATGATTTCGATGGTACGGATAATATTCAAATGAAACAAATTGATGATTTCTTTG
GTACTCAAACAAATGAAGATAGGAAGAAGATGAATCAGATTTTGATGAAGAGGAAGAAGA
AGAAGAAGAAGATTT
Length of connected seq. 1325
Full length Seq ID -
Full length Seq. -
Length of full length seq. -