>SSK306 (SSK306Q) /CSM/SS/SSK3-A/SSK306Q.Seq.d/
ATGATCTCTGAAAAAGTTGGTACAAATGTTGATAATGTTCATAATGTTATAATTTGGGGT
AATCATTCTCAAACTCAAGTACCAGATGTTAATCATGGTTATATTTTAAATTATCCAAAT
CGTGGTTTAATTGAACCAATTCCATCATCAGTTAATGATGATAAATGGTTAAATGAACAA
TTTATTCCATTAGTTCAAAATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCA
GCTGCTTCAGCTGCCAATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAA
GATGGTGAACATGTTTCAATGGCTGTTTATTCCGATGGTTCTTATAATGTTCCAAAAGGT
TTAATCTTTTCATTCCCAGTAACTTGTCATAATGGTCAATGGACAATCGTGCAAGGTTTA
AAAATTAATTCTTCAACTCAACAAAAAATAGATGCTACAATTAAAGAATTACAAGAAGAA
AAAGAAACTGCTATGTCATTTTTAAATTAAATTAAXXXXXXXXXX

MISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDDKWLNEQ
FIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKG
LIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEKETAMSFLN*i---

Frame A:
MISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDDKWLNEQ
FIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKG
LIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEKETAMSFLN*i---


Frame B:
*slkklvqmlimfiml*fgviilklkyqmlimvif*iiqivv*lnqfhhqlmming*mnn
lfh*fkievqqllqqenyhqllqlpmqslvmleigy*vlkmvnmfqwlfipmvlimfqkv
*sfhsq*lvimvngqsckv*klilqlnkk*mlqlknykkkkkllchf*ikl---


Frame C:
dl*kswykc**cs*cynlg*sfsnsstrc*swlyfklskswfn*tnsiis****mvk*ti
ysissk*rcnsycskkiiiscfscqcnrwsc*rlviry*rw*tcfngclfrwfl*cskrf
nlfipsnls*wsmdnrarfkn*ffnstknrcyn*ritrrkrncyvifkln---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK306 (SSK306Q) /CSM/SS/SSK3-A/SSK306Q.Seq.d/                       1021   0.0
VFK667 (VFK667Q) /CSM/VF/VFK6-C/VFK667Q.Seq.d/                       1013   0.0
AFI848 (AFI848Q) /CSM/AF/AFI8-B/AFI848Q.Seq.d/                       1013   0.0
AFI745 (AFI745Q) /CSM/AF/AFI7-B/AFI745Q.Seq.d/                       1013   0.0
AFK292 (AFK292Q) /CSM/AF/AFK2-D/AFK292Q.Seq.d/                        997   0.0
VFL665 (VFL665Q) /CSM/VF/VFL6-C/VFL665Q.Seq.d/                        989   0.0
VFH705 (VFH705Q) /CSM/VF/VFH7-A/VFH705Q.Seq.d/                        989   0.0
AFJ250 (AFJ250Q) /CSM/AF/AFJ2-C/AFJ250Q.Seq.d/                        987   0.0
VFL380 (VFL380Q) /CSM/VF/VFL3-D/VFL380Q.Seq.d/                        981   0.0
VFI622 (VFI622Q) /CSM/VF/VFI6-A/VFI622Q.Seq.d/                        959   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH154539|BH154539.1 ENTSE16TR Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence.    74   2e-09  1
AZ672431|AZ672431.1 ENTMD91TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74   2e-09  1
AF248632|AF248632.1 Entamoeba histolytica NAD-specific malate dehydrogenase 1 (Mdh1) gene, complete cds.    74   2e-09  1
AZ528199|AZ528199.1 ENTBY57TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74   2e-09  1
AZ684282|AZ684282.1 ENTMV84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74   2e-09  1
AZ549943|AZ549943.1 ENTGT43TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74   2e-09  1
BH166705|BH166705.1 ENTSU36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74   2e-09  1
BH130836|BH130836.1 ENTMY39TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74   2e-09  1
BX678374|BX678374.1 Pinus pinaster root EST, clone RS08C05.        54   7e-08  2
AA557074|AA557074.1 916 Loblolly pine N Pinus taeda cDNA clone 6N3E, mRNA sequence.    54   8e-08  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GE6) RecName: Full=Probable malate dehydrogenase 1;         ...   317   1e-85
(O24047) RecName: Full=Malate dehydrogenase, cytoplasmic;       ...   175   7e-43
FB851793_1(FB851793|pid:none) Sequence 71066 from Patent WO20080...   174   1e-42
AY087986_1(AY087986|pid:none) Arabidopsis thaliana clone 40174 m...   174   1e-42
FB851933_1(FB851933|pid:none) Sequence 71206 from Patent WO20080...   173   2e-42
AF459646_1(AF459646|pid:none) Lupinus albus malate dehydrogenase...   173   2e-42
(Q7XDC8) RecName: Full=Malate dehydrogenase, cytoplasmic;       ...   173   3e-42
AC122161_21(AC122161|pid:none) Medicago truncatula clone mth2-11...   172   3e-42
FB851795_1(FB851795|pid:none) Sequence 71068 from Patent WO20080...   172   5e-42
FB851939_1(FB851939|pid:none) Sequence 71212 from Patent WO20080...   172   6e-42

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSK306 is cyt

>SSK306F.Seq
ATGATCTCTGAAAAAGTTGGTACAAATGTTGATAATGTTCATAATGTTATAATTTGGGGT
AATCATTCTCAAACTCAAGTACCAGATGTTAATCATGGTTATATTTTAAATTATCCAAAT
CGTGGTTTAATTGAACCAATTCCATCATCAGTTAATGATGATAAATGGTTAAATGAACAA
TTTATTCCATTAGTTCAAAATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCA
GCTGCTTCAGCTGCCAATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAA
GATGGTGAACATGTTTCAATGGCTGTTTATTCCGATGGTTCTTATAATGTTCCAAAAGGT
TTAATCTTTTCATTCCCAGTAACTTGTCATAATGGTCAATGGACAATCGTGCAAGGTTTA
AAAATTAATTCTTCAACTCAACAAAAAATAGATGCTACAATTAAAGAATTACAAGAAGAA
AAAGAAACTGCTATGTCATTTTTAAATTAAATTAA----------