>SSK263 (SSK263Q) /CSM/SS/SSK2-C/SSK263Q.Seq.d/
GTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATGGTTGT
TTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAGGAGAT
ATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCACCAGTT
ATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAGTTGCA
GAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATTTTTGT
GTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCATTAAA
AAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGTTGGTT
GGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAACCTCA
CCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTTTATCA
CATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAAACCA
AACGATAAAATCATTTATATGGATGGTGGTTTCGATTTXXXXXXXXXX

VFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPV
MNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEGIK
KSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTSLS
HFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFD---

Frame A:
VFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPV
MNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEGIK
KSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTSLS
HFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFD---


Frame B:
flq*vlqliksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikvhql
*mnkkdikqyvhvngqmklqkvhlil*lkniwiv*tvifvymvkifqlvqmvkmfmkalk
rvvnldssnvlkvfqqpswlvvcyyapktifkmfqvskphhwevsiqtfytnnhhtqvyh
issqpperssnsqkvvhqnqtiksfiwmvvsi---


Frame C:
fyneyyn**kan*slc*wlf*fnafwtckciktskrirryfsswctyr*rnckk*rstsy
e*trki*sstcm*mgr*scrrctlyfn*rifg*fkl*flctw*ryfswcrw*rcl*rh*k
ew*i*ihqty*rcfnnrvgwsyvimhqrpsskcfr*anltigrcqskrftqtitihkfit
fppnhqkdrpilrrsftktkr*nhlygwwfr---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN722 (VFN722Q) /CSM/VF/VFN7-A/VFN722Q.Seq.d/                       1265   0.0
VFI626 (VFI626Q) /CSM/VF/VFI6-B/VFI626Q.Seq.d/                       1265   0.0
VFF530 (VFF530Q) /CSM/VF/VFF5-B/VFF530Q.Seq.d/                       1265   0.0
VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/                       1265   0.0
SSK263 (SSK263Q) /CSM/SS/SSK2-C/SSK263Q.Seq.d/                       1265   0.0
VFG365 (VFG365Q) /CSM/VF/VFG3-C/VFG365Q.Seq.d/                       1257   0.0
CFG421 (CFG421Q) /CSM/CF/CFG4-A/CFG421Q.Seq.d/                       1251   0.0
VFJ833 (VFJ833Q) /CSM/VF/VFJ8-B/VFJ833Q.Seq.d/                       1249   0.0
VFG581 (VFG581Q) /CSM/VF/VFG5-D/VFG581Q.Seq.d/                       1249   0.0
VFA266 (VFA266Q) /CSM/VF/VFA2-C/VFA266Q.Seq.d/                       1249   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG140383|BG140383.1 EST480825 wild tomato pollen Lycopersicon pennellii cDNA clonecLPP17G1 5' sequence, mRNA sequence.    92   1e-16  3
BG131085|BG131085.1 EST463977 tomato crown gall Lycopersicon esculentum cDNA clone cTOE2D11 5' sequence, mRNA sequence.    92   2e-16  3
AW217896|AW217896.1 EST296610 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD1C15, mRNA sequence.    92   2e-15  2
AI778006|AI778006.1 EST258885 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES3N17, mRNA sequence.    92   3e-15  2
AW217261|AW217261.1 EST295975 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC89G22, mRNA sequence.    92   3e-15  2
AW219042|AW219042.1 EST301524 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX2H3, mRNA sequence.    92   3e-15  2
BG138134|BG138134.1 EST478576 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP8K18 5' sequence, mRNA sequence.    92   3e-15  2
BG642411|BG642411.1 EST355887 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD11C15 5' end, mRNA sequence.    92   3e-15  2
BI935302|BI935302.1 EST555191 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD22O12 5' end, mRNA sequence.    92   1e-14  1
BG133537|BG133537.1 EST466525 tomato crown gall Lycopersicon esculentum cDNA clone cTOE13N15 5' sequence, mRNA sequence.    92   1e-14  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BZ4) RecName: Full=Ethanolamine-phosphate cytidylyltransfera...   433   e-120
BT077764_1(BT077764|pid:none) Lepeophtheirus salmonis clone lsal...   236   3e-61
AL663030_9(AL663030|pid:none) Mouse DNA sequence from clone RP23...   236   6e-61
AK166319_1(AK166319|pid:none) Mus musculus mammary gland RCB-052...   236   6e-61
AE014134_2379(AE014134|pid:none) Drosophila melanogaster chromos...   235   7e-61
(Q5EA75) RecName: Full=Ethanolamine-phosphate cytidylyltransfera...   234   2e-60
AC087079_11(AC087079|pid:none) Caenorhabditis elegans cosmid Y37...   230   3e-59
AY189524_1(AY189524|pid:none) Mus musculus CTP:ethanolaminephosp...   229   4e-59
BC088018_1(BC088018|pid:none) Xenopus tropicalis phosphate cytid...   229   5e-59
AM502250_130(AM502250|pid:none) Leishmania infantum chromosome 32.    219   7e-56

 psg: 0.62  gvh: 0.53  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSK263 is mit

>SSK263F.Seq
GTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATGGTTGT
TTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAGGAGAT
ATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCACCAGTT
ATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAGTTGCA
GAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATTTTTGT
GTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCATTAAA
AAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGTTGGTT
GGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAACCTCA
CCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTTTATCA
CATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAAACCA
AACGATAAAATCATTTATATGGATGGTGGTTTCGATTT----------